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X-Men and allies
MagnetoFounder of the AoA X-Men, Magneto's life was changed in a pivotal moment when his dear friend Xavier was murdered by an insane and incredibly powerful mutant actually Xavier's time-travelling son, Legion. Swearing to uphold Xavier's dreams of human/mutant peace, Magneto finds himself the founder of the X-men and one of the few remaining in opposition to Apocalypse and his Horsemen.For tropes, see Self Demonstrating/Magneto.
RogueA mutant with the power to absorb the memories and genetic abilities of anyone she touches, she accidentally absorbed too much power from a woman named Lorna, permanently acquiring her electromagnetic manipulating abilities — in contrast to her mainstream counterpart, who acquired Flying Brick status by absorbing the powers of Ms. Marvel.
QuicksilverMagneto's son, driven to avenge his slain sister. Storm's lover in this continuity.
BansheeBanshee was older than most members of the X-Men and had actually retired. However, Magneto later asked him to come out of retirement to fight against Apocalypse.
SabretoothOriginally one of Apocalypse's lapdogs, Sabretooth found even he had his limits when a mission turned out to be far darker in nature than he had initially believed. Deemed unfit to survive by Apocalypse, Sabretooth was left behind after a battle with Magneto and his X-Men, and threw his loyalty in with them to survive.
IcemanIceman was one of the first X-Men in this continuity as well, though it seems that the crapsack world he lives in has made him master his powers much more quickly. He almost always appears in his ice form, but his personality seems to be largely the same as his mainstream counterpart's.
MorphMorph is the wise-cracking jokester of the X-Men, who was formerly known as Changeling. He often gets on his teammate's nerves, particularly Sabretooth and Sunfire.
ColossusBrutal and merciless, Colossus is the reluctantly appointed teacher for Generation Next, but cares only for one person: his lover, Kitty Pryde, aka Shadowcat.
Nate GreyGenetic offspring of Scott Summers and Jean Grey created by Sinister. You can learn more about him here.
The Four (actually many) Horsemen of Apocalypse
Mister Sinister (Nathaniel Essex)
Prelate Rasputin, the Forgotten Horseman (Mikhail Rasputin)
Abyss (Nils Styger)
War (Abraham Kieros)
Elite Mutant Force
Cyclops (Scott Summers)
Havok (Alex Summers)
The Dark Beast (Henry "Hank" McCoy)
Northstar and Aurora (Jean-Paul and Jeanne-Marie Beaubier)
Amazon and Cannonball (Elisabeth and Samuel Guthrie)
Bedlam Brothers (Terrence and Jesse Aaronson)
Emplate (Marius St. Croix)
The Church of the Madri
The Brotherhood of Chaos
Brother Jeffries (Madison Jeffries)
Sister Vanessa (Vanessa Carlyle)
The Pale Riders
Damask (Emma Steed)
Dead Man Wade (Wade Wilson)
The Bounty Hunters
Other Servants of Apocalypse
The Shadow King (Amahl Farouk)
The Black King (Sebastian Shaw)
Magma (Amara Aquilla)
Human High Council
Victor Von Doom
Warren Wortington III