Which actually rather makes sense in a movie set in a culture that has a nice, huge belief in the Real Life applicability of Because Destiny Says So...
The Adjustment Bureau may or may not work for god, but their main approach is to gently nudge things in the "right" direction in order to follow "the plan".
Kenneth Miller's book Finding Darwin's God uses this as part of its demonstration that acceptance of evolution does not actually have to have any effect on one's belief in God, as a deity who can create life through manipulation of natural laws would have a greater claim to omniscience than one who could create life from dust. Deals primarily with Christianity (after all, who else is having the running battle with Darwin?) and makes excellent points about how a truly omnipotent, omniscient God working in evolution is not only more impressive than the "boom, stuff happened" God, but also completely compatible with Christianity. Also Needs More Love.
This is usually pulled as the explanation for God in The Dresden Files. This trope is invoked on several occasions, usually by Knights of the Cross. Harry himself eventually falls in the camp of: Knows that God exists, just not religious.
The Eternals in Isaac Asimov's The End of Eternity work like this; at the very start of the novel, the protagonist changes the course of history by moving one particular item to a different shelf. It turns out they work this out with a particular branch of mathematics.
At the end of Good Omens, Crowley points out to Aziraphael that an omniscient, omnipotent god would never have allowed them to prevent the apocalypse, or for that matter have allowed Lucifer's rebellion unless that was what He wanted all along. He goes on to suggest that the war between Heaven and Hell isn't so much a chess game as an incomprehensibly complex game of solitaire.
Following that logic, it could be said that God wouldn't have allowed atheists to exist unless He wanted them to, and also people who hate atheists, and people who hate people who hate atheists, and people who hate people who hate...people...who hate...atheists... So really everything anyone does is for the good of the universe - take that, Mom!
Near the beginning of the book it is said that God does not play dice with the universe, He plays an ineffable game of His own devising which might be described from the vantage of the other players, ie everybody, as 'playing a complex and unintuitive version of poker in a pitch black room with blank cards for infinite stakes, with a dealer who won't tell you the rules and who smiles all the time ' (paraphrased).
There was no god involved, but in The Science of Discworld III: Darwin's Watch Hex claims that the voyage of the Beagle was almost as significant an event as Joshua Goddelson leaving his house by the back door in 1734, leading to commercial nuclear fusion being perfected 283 years later.
In To Say Nothing Of The Dog by Connie Willis, no divinity is ever mentioned, but this is the way the universe corrects potential errors due to time travel.
And in All Clear, a theory is presented that the universe regarded the Germans winning World War II as such an error, and has since corrected it via time travel through amazingly subtle coincidences without anyone realizing it.
In Robin Hobb's Soldier Son trilogy, the Speck magic, as well as Orandula the god of balances manipulate the protagonist through a series of convoluted chains of events, most of them set off by tiny, seemingly insignificant actions, like giving a stone to Caulder Stiet, which leads to the discovery of gold in the plains, which leads to almost all Gernian troops being pulled from the Specks' land, thus protecting the Ancestor Trees from being cut.
Kurt Vonnegut's novel Cat's Cradle introduces the religion of "Bokononism," wherein all living beings are arranged by God in groups called karass, in order to advance the divine will. The members of a karass may never even know each other, and their work may overlap in bizarre, coincidental ways, but they work together for a single purpose that they'll never know.
Of course Bokononism admits that it's all bull shit.
God's interactions with Joan on Joan of Arcadia. God will tell Joan to do something, for reasons that aren't immediately apparent, but which makes sense by the end of the episode. For example, in the pilot, God tells Joan to take a job at a bookstore. After coming home from work one night, Joan runs into a man who she thinks is God in another avatar, but who's actually the serial killer her dad's been following. Joan figures this out and escapes from his car, causing him to crash, causing the police to find him and arrest him.
As well as this, it motivated Joan's brother to get out of the house and get a job.
God: I work in mysterious ways. So do you.
Similarly (to the point that FOX tried to kill the series so no one would accuse them of ripping off Joan), the talking toys in Wonderfalls. Each will repeat a short phrase to Jaye, who has to act on what little evidence she has for a generally beneficial result (or else they will harass the shit out of her). One episode has a toy penguin tell Jaye, "Bring him back to her!"; after some desperate flailing, Jaye manages to a) restore a nun's faith in God, and b) reunite a priest with his wife and daughter. In some episodes, Jaye deliberately decides not to follow the advice of the toy animals, which still results in everything working out right.
Quantum Leap. At one point, Al theorizes that "God, time, fate, whatever" is responsible for Sam's leaps, as something is obviously helping Sam leap into people who need help.
Almost subverted in Supernatural, where God's presence is pretty much zero for the first three seasons. Then in season 4, He sends an angel to revive Dean from Hell and starts being a lot more proactive. When Dean questions Castiel about it, Castiel begins to state this trope, but Dean cuts him off and warns him, "If you say 'In Mysterious Ways,' so help me I will kick your ass."
A later episode shows that God's ways are so mysterious, even Castiel doesn't know what's going on.
Or (according to Anna) if God even exists. The archangels, and Lucifer, all seem very certain their father is real, but that he is either dead or just gone forever. As one might imagine this distresses them a tad. Castiel wants to find him and ask what's up.
They found out from an angel named Joshua that God is on Earth and aware of Apocalypse, but simply doesn't care. Cue to severe despair for Dean and tremendous lost of faith and start of severe alchoholic problems for Castiel in following episodes.
Even later, it is revealed that Chuck, the prophet who began writing Dean and Sam's adventures for profit, was actually God the whole time and was slightly guiding them. Of course, considering some hints from Gabriel, Lucifer and others and the way all angels and humans are, it still doesn't excuse him of being one hell of a lousy father, considering Gabriel decided to ditch them and turn into the Trickster, Lucifer... well, you know the rest.
Which, in retrospect, means that when Chuck was apologizing for making them live bad writing, he was apologizing for their entire lives.
In Saving Grace, God's plans for protagonist Grace Hanadarko, the nature of angels or the reasons for giving her a shot at redemption, thus oftenly investigated in many ways, will stay mysterious to her until the very last episode.
Although this could be because they're (benign) Starfish Aliens / Eldritch Abominations who have as much difficulty understanding "linear time" beings as we do them.
Early Edition had the main character receiving tomorrow's paper today every episode, which gave him the ability to prevent crises before they happened.
Eli Stone as he gains prophetic visions, usually of George Michael, that help him with his cases and his personal life.
Journeyman had the main character being randomly shunted throughout time to aid others and set history "back on track," which is quite similar to...
The short-lived show Mysterious Ways revolves around a trio of friends who investigate "miraculous phenomena." The tile is obviously a reference to this trope, though the miracles are rarely, if ever, directly linked to God (they usually leave that to the audience to decide.)
The qashmallim of Promethean: The Created, "angels" made of the Divine Fire that gives Prometheans life. They manifest for only a short while, and have one particular purpose they must complete in that time. This purpose can range from bringing two people together to causing a nuclear meltdown, all in service of "the Principle."
In Nomine is interesting in this regard: If you roll a 111 or 666 on a 3d6 roll, either God (on a 111) or Satan (on a 666) intervene. What this means depends on which side of the War you're on, but the GM is encouraged to work in this method (for example, a Demon doing something explicitly supernatural, on a 111, will discover a warrior Angel-for reasons of his own- walking around the corner right as the Disturbance is traceable to him).
"We must simply accept that God can change without explanation, just as we accept that first Dick York was Darrin and then suddenly Dick Sargent was Darrin."
Alternatively, they'll use the various Batmans from the 90's movies (The official recording uses this version)
This is the title of the opening number of the musicalThe Color Purple, celebrating God's power to bring good out of evil. However, there's powerful potential for Alternate Song Interpretation there - here's this church full of Gossipy Hens speculating on the life inside the home of a man whom they know is abusive, yet they don't lift a finger to remove his two daughters (one of whom is pregnant for the second time, and fourteen) from his house.
Parodied in Fable III. After completing one sidequest, the villager you helped exclaims that the gods must have sent you to help him out. He then starts to examine this idea more deeply and reasons that it would be logically inconsistent to credit good things to divine will whilst at the same time writing off the bad as mere misfortune. Hence, not only was you saving him all part of the plan, but so was him getting into trouble in the first place, the stress he went through, and every minor problem he's ever faced. He ends up desparing at a Universe that is at best indifferent to human suffering and at worst actively malicious.
One of the Strangers in Red Dead Redemption can be found lying in the desert, delirious and sick. The first time you offer to help her, she sends you away saying God will save her. If you come back to give her medical supplies, she decides that obviously she was right, because God sent you to help her.
Fan Theory has it this is the true story regarding the events of Misfile; see the Wild Mass Guessing entry for the comic. Word Of God has been strangely silent in regards to Jossing this, only adding further fuel to the flames.
Parodied on American Dad when Stan meets God after learning his family is about to die.
God: Everything happens for a reason. Stan: What reason could there be? God: Stan, I'm gonna level with you. If your family is allowed to live, Stanford's tennis team will go 0-and-8 in conference play.
The closest thing Futurama seems to have to God, a sentient nebula, believes that this is the way Godshould behave. Unlike many examples, it actually explains why it believes this way: If a deity does too much for its people, they will become dependent on it; if it does too little, then its people will not be able to deal with problems beyond their abilities. By working in mysterious ways the people are motivated to work hard and expand their knowledge, but can still receive help if they need it.
When you do things right, people won't be sure you've done anything at all.
Judge Frollo makes such a remark in the Disney version of The Hunchback of Notre Dame, when mentioning that Quasimodo may end up being useful to him.
Some Deists see the world this way, in that God MIGHT interfere with us mortals. But if he does it at all, he does it in a way that we won't attribute to divine intervention.
