"The movie is more generous in showing what the visitors found here. Columbus encounters friendly Indians, of which one—the chief's daughter—is positioned, bare-breasted, in the center of every composition. (I believe the chief's daughter is chosen by cup size.)"
— Roger Ebert reviewing Christopher Columbus: The Discovery
In Rocket Girls, Matsuri is the first native to greet Yukari (since Matsuri speaks Japanese, unlike the rest of the Tariho tribe). Also subverted in that Yukari is actually also the chief's daughter, though by a different wife.
In X-Men, Ororo Munro/Storm's mother was Princess N'Dare, and her bloodline was the source of Ororo's white hair, blue eyes, and rarely-used talent for magic (which might have influenced her genetic mutation).
Ember from ElfQuest goes through a classic trope-fulfilling phase once she reaches puberty. She starts dressing in a leather bikini, wants to meet boys from outside the tribe, and spends most of her time sulking and talking to her wolf-friend. Some years later, though, she becomes chief of her own tribe, and turns out to actually have leadership qualities.
Also from ElfQuest: Rahnee (who spends a lot of time rebelling against her father) Goodtree (who goes on a Vision Quest before she can properly become chief), Shuna (chief Cutter's adopted human daughter, who tries really hard to be exotic and elfin when she starts meeting human men), Vaya (who dies in battle, but not before she finds a boyfriend outside the tribe and defies chief Kahvi's wishes), Kahvi herself (who didn't get along at all with her chief father Two-Spear and left the tribe in a huff), and Venka (Kahvi's second daughter, who... actually gracefully evades the trope).
And don't forget Leetah herself. She's the exotic daughter of one of her tribe's two spiritual leaders, she starts her role in the plot being kidnapped by (and falling in love with) the white main character, and the entire first story arc is about two men fighting over her: the white hero 400 years younger than her, and the proud dark-skinned hunter she grew up with that she was about to get "engaged" to. Guess who wins. The trope is played with in an interesting way in that it's the hero's people who are the noble (and nubile) savages, while Leetah and her people are more civilized.
Violently deconstructed with Princess Nadkoko, who fits almost all elements of this trope... except the one who falls in love with her, Razorcat, is a disfigured, Axe CrazyBerserker serving as The Dragon to his Knight Templar mother. Cue to a Tear Jerker when his mother betrays Nadkoko's tribe and orders Razorcat to kill her, leading to a dilemma with Berserker Tears.
Marvel Comics Western hero the Ringo Kid was the son a white lawyer/rancher and a Commanche princess (never midn that the Commanche don't have princesses).
Tex Willer, italian comic from Bonelli. Tex became chief of the Navajos after marring the chief's daughter when she saved him from being killed.
Films - Animated
Pictured above: Disney's Pocahontas plays this trope pretty straight except Pocahontas is the protagonist herself.
Also the other Powhatan are actually not that much less attractive than her (just look at Nakoma) and they are portrayed as having identical mindsets, emotions and intelligences as the English (white) settlers.
Peter Pan (the Disney version) featured Tiger Lily, who was rather more realistic in appearance as compared to the other (literally red skinned) Indians presented in the film. She was also far more attractive, to no one's surprise.
Kida from Atlantis: The Lost Empire played completely straight. While she is quite spirited, she doesn't do terribly much until she is merged with the crystal that powers Atlantis. She of course gets together with the first white boy she sees, Milo.
Plio (Aladar's adoptive mother) and her daughter Suri from Dinosaur. Her father, Yar, is actually the leader of the resident lemur clan.
In the direct-to-video sequel An American Tail: The Treasure of Manhattan Island, the daughter the Chief of an underground tribe of Native American mice named Cholena comes with Fievel and his friends to the surface to see if Europeans have become more tolerant. Sadly, they have not.
FernGully has Crysta, who is essentially Magi Lume's adopted daughter and apprentice.
Crysta is the daughter of the fairy chief.
Films - Live Action
Ace Ventura: When Nature Calls plays this straight with the Wachati princess. She's one of the few members of the tribe who speaks fluent English, and offers herself sexually to Ace in gratitude for his assistance (he turns her down due to his vows as a Buddhist monk, but this doesn't stop him from furiously masturbating later).
He does eventually do her, as she's no longer a virgin by film's end thanks to Ace.
"They can tell that?"
Shaft woos an African princess in the second sequel to his Blaxploitation hit. However she and her father were both educated in the West and act like it.
In Shanghai Noon, Jackie Chan's character gets engaged (married?) to the Indian chief's daughter somewhat by accident. But it all works out when she decides to elope with Owen Wilson's character instead.
In the film Stargate Daniel Jackson gets married to the Abydos chief's daughter.
In James Cameron's Avatar, the main character first meets Neytiri, the daughter of both the tribal and spiritual leaders of the Na'vi. The trope is even named outright.
Christopher Columbus: The Discovery has topless native girls. The chief's daughter is the most prominent of them, and Roger Ebert "joked" that the position is probably chosen by cup size.
Codex Alera has Kitai, daughter of Doroga, leader of the Gargant clan of the Marat. Throughout the series, Kitai proves herself to be quite the competent fighter, easily able to hold her own against enemies that can overcome even the series' protagonist, Tavi.
Doubles as a Green-Skinned Space Babe since the Marat are non-humans and literally flew to the planet in a spaceship, as opposed to the traditional humans who are the descendants of a magically-transported Roman legion.
Dragonlance has Goldmoon, whose status as "Chieftan's Daughter" gets in between her and her lover, Riverwind. It should be noted, however, that they are both from the same culture (plains barbarians).
Rukaiya in Belisarius Series is the daughter of an Arab sheik. In something of a subversion her dad is an urban trader and one of the most important merchant princes in the area.
In one of the less spectacular Farscape episodes, John Crichton is stranded on an planet inhabited by an - apparently - primitive tribe of aliens. The daughter of the local matriarch is attracted to him, but he refuses her love knowing it will cause trouble in the tribe. The trouble happens anyway.
In the Star Trek episode "The Paradise Syndrome", Kirk suffers a bout of amnesia and ends up married to native Princess Miramanee. It does not end well.
It sometimes seems like every third Hopi legend/story/oral history involves a village headman's daughter (Hopis don't really have "chiefs") either as love-interest or protagonist. The heroes are Hopi too, of course, but Everything's Better with Princesses.
Shania in Shadow Hearts : From the New World. She's the lead female character, love interest to the white protagonist, wears skimpy animal-skin looking clothing and dual wields tomahawks. Although she's not literally the daughter of a chief, she mostly follows this trope.
Subverted and Played Straight in Avatar The Last Airbender. While Katara is the daughter of the chief of the southern tribe, she's never referred to as "Princess" and doesn't seem to have all that much interest in finding a husband. Her main priorities are learning how to Waterbend and helping Aang save the world (though he does have a crush on her and they get together eventually). However, this is mostly likely because the southern tribe isn't deeply into tradition, as the Northern tribe's Princess Yue most definitely plays this trope for all it's worth.
When Sokka tries to seduce Yue, he refers to himself as a Prince, but Katara asks "Prince of what?". For all practical purpose, being the daughter of the chief of a small, primitive town, doesn't give you a high rank outside, especially compared to The Chief's Daughter from a powerful kingdom.
A part of it also is that The Southern Water Tribe appears to be democratic, while the Northern Water Tribe seems to be a Monarchy.
Pocahontas was the daughter of Algonquin Chief Powhattan note though technically not a princess since their inheritance laws worked differently, but stories of her romance with John Smith are greatly exaggerated. She was a preteen at the time, for God's sake!
And the real John Smith wasn't exactly what you'd call a blonde Adonis. He was said to be a short, pudgy ginger.
Though she did wind up with another English guy, John Rolfe, so sort of Played Straight. King James I took her 'royalty' so seriously he considered punishing Rolfe for his presumption in marrying a 'princess'.
Historical rumor has it that John Smith seemed to very coincidentally have Chieftan's Daughters fall madly in love with him in just about every native culture where he showed his face. According to his journals, anyway.
There's also some talk that what John Smith witnessed (if it really happened) may have been a ritualized ceremony designed to show newcomers who was boss (by nearly "executing" them and then having them saved by a little girl).