In Every Shiny Thing, Lauren suggests that she, Sierra, and Audrey dress as the Fates from the movie, which she and Audrey loved in second grade, but they just get in a fight over who gets to be which Fate.
Family Guy: At the end of the Helen of Troy segment in "Heart Burn", Peter (playing the role of Paris) says they could have Hercules appear given that Family Guyis now owned by Disney. However, he's dismayed when he's then told they can't do that but that they can have Launchpad McQuack appear instead.
At one point in "Greece Lightning", Perry peeks out from behind a vase with an illustration of the Muses on it.
In "Troy Story", Isabella wears the same dress and ponytail as Megara.
Robot Chicken: A sketch from "May Cause Numb Butthole" involves Hades getting a haircut. Given that his hair is made of fire, the barber uses a fire extinguisher to put it out.