Some notes on my recent cleanup pass. More to follow.
All Women Are Lustful: Possibly implied by Captain Typho's comment about being more worried about Senator Padme trying something foolish, than Anakin.
"Possibly implied" does not make a trope. A young woman and a young man being attracted to one another when in close proximity hardly implies an aesop about how women are lustful.
Crouching Moron Hidden Badass: We all knew Yoda must have been amazing in his prime, but this movie was the first to show it.
And he wasn't even in his prime. Imagine what he would have been like when he was only 400 years old!
This is also the first film where we get to see Mace Windu in action. Since he's played by Samuel L Jackson, we all knew he was going to be a badass, but we never got to see this side of him in the first movie.
At no point are we implied to believe that Yoda or Mace Windu are dumb or ineffective. CMHB is not when a character whom we know to be powerful suddenly demonstrates that fact.
Misuse of the trope. There is a Xanatos Gambit, yes, but not a Gambit Roulette. Palpatine and Dooku are not counting on impossibly unpredictable things happening to make their plan work.
Jossed: Up until this film, it had generally been assumed, and accepted as fanon, if not canon, that the Clone Wars had been fought by the Republic against the Clones.
Some EU writers got it right though, notably Timothy Zahn made it a point that in the early days the Empire made extensive use of clones to fill out their Stormtrooper ranks.