- Any moment where you play the Poké Flute within a Pikachu's earshot."Pi-ka-CHUU~!!" (uses Thundershock)
- Meowth getting hit with Pidgey's gust.
- Dancing Meowth, which, of course, requires the PokéFlute or using Pester Balls to simply save Meowth from the vengeful Pidgeys.
- You can find a sleeping Snorlax on the Beach stage. Simply taking a photo won't yield any satisfactory results, but hit it with a Pester Ball and it'll sit up and scratch its stomach for a few seconds. Use the Poké Flute, and it will suddenly jump up and dance!
- In the beach level, an Eevee is seen playing with a pink ball. When you throw Pokémon Food or a Pester Ball at it, the ball is revealed to be a Chansey. Its egg also flies right up into the air, which the Chansey catches in its pouch.
- The first Pikachu you see in the Tunnel stage. Take its picture, and it'll run off until it hops on the first Electrode. And then Electrode explodes with Pikachu unharmed but startled.
- The Volcano stage has a group of Charmanders yelling "Char!" over and over. Michael Haigney's voice especially makes it funny.
- If the first Charmander in the stage reaches Pokémon Food thrown by you before the Magmar next to it does, Magmar will get so mad, it will attack Charmander with fire breath. Charmander then evolves into Charmeleon, scaring Magmar into playing dead.
- Throw Pokémon Food right between two Magmar, and they will fight over it, knocking each other out with Flamethrower if they both reached it at the same time.
- The River stage is a cornucopia of comedy. We have Bulbasaur's "Bul-ba!" when it gets hit with a Pester Ball, the Slowpoke, and the funniest part of the stage is Psyduck. If you hit the yellow ducky with Pokémon Food or a Pester Ball, it sinks into the water, but it'll continuously pop out of the water and quack.
- The Cave stage has the Ditto posing as Bulbasaur, as well as Pikachu being kidnapped by a Zubat. If you rescue Pikachu by pelting Pester Balls at Zubat, it'll fly down on balloons it sprouts from its back.
- Jigglypuff getting upset at players who interrupt its singing by either throwing an apple or playing the PokéFlute.
- Upon entering the Valley, three Squirtle swim in front of the vehicle. They show up again later to knock a Mankey off a cliff, as if it were a bowling pin.
- The sound Pikachu makes after it eats Pokémon food. CHAAAAAAAAAAAAAAAAAAAAAAAAAAAA!
- The official strategy guide has this gem when explaining the ZERO-ONE's hovercraft mode.Since the crumbling rock walls of the Cave are too unstable to support a vehicle, jet thrusters activate to enable the ZERO-ONE to hover safely. Unfortunately, there are no in-flight snacks on this trip.
- If, for whatever reason, you took a photo of a Pokémon, with their rear end pointed at the camera, and then show it to Oak, his reaction is pretty funny.
- One of Mew's boss patterns is it literally wiggling its feet at you.
- A few of Oak's bonus criteria are worth a chuckle, as they make him come across as Easily Impressed.Wow! It's Pikachu on a stump!
- Oak's reaction to a Pokémon hit with a Pester Ball:Oh dear...
Funny / Pokémon Snap