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Flash gets resurrected from his remains the issue after his death in #4. He is then resurrected a second time in the body of the recently deceased Teri.
Bad Future: Peace in the galaxy is broken after The Five toppled governments and slaughtered billions, and the Green Lanterns are wiped out, having become the most hated group in the universe.
Big Bad Friend: Terry turns out to have been the leader and creator of the Five all along in issue 7.
Blood Knight: Wonder Woman loves to fight and would rather talk with her fists than her mouth.
Body Horror: When the League battles Locus, she eviscerates the Flash with a thought.
Brain Bleach: Subverted by Wonder Woman when Superman mentions his memories of their former relationship - she simply notes her relief that her memories of the relationship remain a blank.
Came Back Wrong: The League are clones of the originals, but lack chunks of their memories and their personalities don't quite match up, whilst Superman lacks his heat vision and flight and Flash lacks his protective aura.
The Cape: Green Lantern holds the personality closest to a classic hero's, and indeed his cloak is his most defining physical feature.
Character Development: In issue #3, Superman starts to show signs of a conscience. Considering how much of an arrogant jerk he is, that's saying a lot.
Cloning Blues: The Flash questions if he and Green Lantern were really best friends, or if they're just programmed to think that. Batman and Green Lantern both note that they remember him being "sunnier". It turns out they're not really clones at all.
Darker and Edgier: Wonder Woman lives for fighting. Superman is sexually promiscuous, belittles Batman, enjoys being worshipped and thinks nothing of killing his foes. They do get a little better after the team's origins are revealed, but not by much.
Evil Costume Switch: Well not evil, but the League's costumes reflect their darker personalities, particularly with Batman's red costume and Wonder Woman's mace.
Explosive Leash: Every member of the Justice League 3000 project has inhaled "nano mines" that can be detonated on a moment's notice so long as they are in range. Terry kills the then-current Flash this way as a show of force to make sure the rest of the league stays in line.
For Science!: Teri's motivation. Terry is slightly more idealistic. Teri abandons this in favor of true heroism when she becomes the Flash, and Terry proves his idealism was all a ruse.
Green Lantern Ring: Green Lantern's cloak mimics the abilities of the traditional Green Lantern ring. He complains that the ring was better.
The Heart: Green Lantern, who tries to placate Batman and Superman.
Heroic Albino: Well more anti-heroic albino. Terry at least genuinely believes in the League and wants them to fix the galaxy's problems, but both of their actions are very morally questionable, such as cloning and tampering with the League.
Legacy Character: The series focuses on the successors of the original Justice League.
Legend Fades to Myth: The tales of the original Justice League have since become fairy tales with multiple interpretations. They think Superman's origin was either an alien landing on Earth, or a farm boy finding a magic cape.
The Needs of the Many: The revelation in #4 that the killing of a person is needed to resurrect each League member raises this as an issue.
Past-Life Memories: The League's are incomplete, causing a large shift in their personalities without their nurture tailoring their nature. They know who each other are, but have no memory of being friends or a successful team. Superman lacks his memories of being raised as Clark Kent, and Batman his parents' deaths.
Reality Warper: Locus. She's so powerful, the Wonder Twins order the League to retreat from the planet that she is on. They don't and a Curb-Stomp Battle ensues in her favor.
Really Gets Around: Wonder Woman is much more forward now, propositioning Batman and Green Lantern. The only man she won't have a go at is Superman.
Superman's eyes tend to glow red when he gets angry. Which, given his new personality, happens a lot.
Required Secondary Powers: Notably averted by the Flash, who doesn't have the aura protecting him from friction as he runs at super speed and requires forcefields to replicate the effect.
The Reveal: The League are not clones at all. The Wonder Twins instead overwrote the memories and DNA of five people with the original Justice League's DNA using nanotechnology, essentially killing these five subjects.
The Sociopath: In issue #3, armed forces make Superman, Batman and Wonder Woman surrender by threatening to gun down the innocents around them, aware that their weapons can't harm the League. Batman quickly gives in, but Wonder Woman couldn't care less.
Stealth Sequel: To Formerly Known as the Justice League and I Can't Believe It's Not The Justice League.
The Unfettered: The new Superman revels in the fact that without the beliefs he gained as Clark Kent holding him back, he can unleash his 'true' self.
Villainous Crush: Locus just got out of a relationship and has the hots for Green Lantern.
We Have Reserves: When the Flash is killed by Locus, the Wonder Twins are horrified, but Terry suggests they generate another Flash.
Wham Episode: Issue #7, just... Issue #7: Terry turns out to be both the leader and the founder of the five. He kills Teri in front of the League and blows up Barry's head with nano-mines, killing him once again. He's also been releasing nano-mines into the air at Cadmus, meaning that he can kill the entire League with the push of a button. And finally, Coeval convinces Terry that there's no reason to take chances by keeping the Cadmus employees alive. Terry agrees and lets Coeval detonate the nano-mines inside every single Cadmus employees' head at once.
Woman Scorned: Locus did not take Green Lantern's "rejection" well.