These are what we call the 'YMMV items.' Things that some people find in this work. We call them 'your mileage might vary' because not everyone sees these things in the same way. This starts discussions in the trope lists, a thing we don't want. Please use the discussion page if you'd like to discuss any of these items.
A different meaning than intended was read in this strip. (See here.)
This moment after Jim's unusually skillful roleplaying:
Jim/Padmé: That was my best death ever! Annie/Anakin: It was amazing. I've never felt so comfortable letting myself go in character before. I never found anyone I could trust. Padmé: Trust me.
Better Than Canon: The fact that it has much better story logic than the actual film really says something.
Genius Bonus: The fact that the Geonosis factory sequence was added in by Pete acting as a substitue GM is even funnier if one is aware that it wasn't part of the original movie script, but was added during production.
Hilarious in Hindsight: In this strip, Jim is admonished about even thinking about wearing Amidala's dresses, just in case they had good armor class. Now Jim is playing Amidala.
In a few Phantom Menace strips, Qui-Gon is obsessed with "casting Summon Bigger Fish". In Star Wars: The Clone Wars, Jar Jar does just that in one episode.
I Knew It: The WMG that Jim plays Padmé when Qui-Gon dies.
Naboo is Mustafar. That is, there is no Mustafar, but Naboo takes its visuals.
Memetic Mutation: Invoked. DMM encourages readers to spread "Jar Jar, you're a genius," across the net. As noted, the comic provided the very first instance of that sentence on the entire interweb.
The Scrappy: As admitted by Word Of God and a complete inversion of the character as portrayed in the movies, there is an attempt to invoke this effect upon R2-D2. Whether or not this is successful will be left to the readers.