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- In the Silver Age Superman comics, Krypton briefly tried putting criminals into suspended animation in orbiting spacecraft before the Phantom Zone was discovered.
- In DC Comics' Earth 2, the alternate world's Arkham Asylum has become a vast cryo-storage unit for villains. Which doesn't stop the new Batman from putting a couple of bullets into the frozen Joker just to be on the safe side.
- In Paperinik New Adventures, the Time Police incarcerates this way some criminals, and keep them in a jail out of time. Justified because the Time Police apply this only to those criminals that are so dangerous they're not concerned with punishment or rehabilitation but protect the world from them, and that's the only way to do it besides death penalty (that in the future they apparently don't have anymore)... And even that could fail: the Raider has the nasty habit to break out before they can place him in the cryo cell (he did it at least twice, and in one occasion even stole a prototype device to move between dimensions), and the one time they did get him in the Time Police found out they only placed his frozen image in the cryo cell.
- In Demolition Man, the titular character, a Cowboy Cop with a habit of collateral damage, is frozen along with the terrorist he captured. To be thawed out decades later when the other guy breaks out from his parole hearing, and the pacifist utopia that L.A. (now San Angeles) has become can't handle him.
- In Minority Report, those arrested by the Pre-Crime unit are placed in perpetual suspended animation as punishment.
- In Lockout, the criminals being held on the orbital prison MS One are kept in cryogenic suspension.
- Star Trek Into Darkness ends with Khan and his associates being put back into cryogenic suspension.
- Supplementary shorts as well as Agents Of Shield indicate that following the events of The Incredible Hulk, Hulk villain The Abomination was placed in a cryocell in Alaska, which makes a certain amount of sense as there's not much one can do with a guy who is strong enough to escape any prison and basically unkillable.
- In Altered Carbon crooks are not only frozen, their brain is uploaded and stored separately. Earth's super-rich have a habit of buying the frozen bodies and using them for their own amusement. Anti-Hero Takeshi Kovacs is brought out of storage after eighty years in the body of a crooked cop who annoyed his "benefactor".
- In the Star Wars Expanded Universe novel Han Solo at Star's End Star's End prison kept thousands of prisoners the Corporate Sector Authority found inconvenient in stasis, including Chewie. Then Han blew it sky high.
- In Bruce Coville's The Search for Snout, placing troublemakers in suspended animation is used as a punishment aboard the alien ship Ferkel.
- In the Commonwealth Saga, the 'death' penalty was abolished in the Commonwealth, so the next best punishment for heinous criminals is to update their memorycell implant, kill their body, and then lock up their memory cell for a few dozen to few hundred years before dumping them in a newly cloned body at the end of their sentence. One character was locked away for 1000 years, and returns in the distant Void Trilogy.
Live Action TV
- Lister from Red Dwarf was placed in suspended animation as punishment for bringing his pet cat aboard the titular mining vessel, violating the ship's quarantine rules. The rest of the crew are later wiped out during a reactor leak and the ship's computer is forced to wait 3 million years until the residual radiation has dissipated and Lister can be safely released.
- A later episode has the crew find a cryopod which either contains a beautiful young woman, or a murderous physcopathic android. It's the android.
- In Star Trek: The Original Series, Khan and his fellow augments were discovered on a Sleeper Ship where they'd been exiled after the Eugenics Wars.
- Tekwar. Convicted criminals are sentenced to suspended animation for varying numbers of years.
- Lost in Space episode "Condemned Of Space". The Robinsons encounter a computer-controlled Prison Ship with criminals kept in Harmless Freezing cryogenic suspension. The clock controlling the re-animation of prisoners had frozen, so they had all been kept "on ice" long past the expiration of their sentences.
- Torchwood: Jack's psychotic brother is ultimately frozen in the Torchwood vaults after blowing up half of Cardiff, trapping Jack underground for 2000 years, and proving Anyone Can Die by causing the deaths of Tosh and Owen. Becomes Fridge Horror in Torchwood: Children of Earth when the Hub blows up and it looks like No-One Could Survive That, let alone someone in a freezer drawer.
- Warehouse 13 has the Bronze Sector, where the Warehouse stores rogue agents, like H.G. Wells and Paracelsus, preserved in the form of bronze statues by an Artifact. More than once people have broken in to free bronzed people. And it turns out that the bronzed are still conscious.
- Eclipse Phase has storage similar to Altered Carbon, but most polities upload the brain to a simulation for rehabilitation or brainwashing.
- Stronghold, the prison for supervillains in Champions, uses a process of suspended animation known as 'hot sleep' to hold prisoners too dangerous to be contained any other way. In-universe, this process is subject to an ongoing series of court cases to determine whether it counts as 'cruel and unusual punishment'.
- In Mass Effect 2 Jack's recruitment mission involves breaking her out of cryo on a Prison Ship. She demonstrates why she had to be frozen as soon as she's thawed.
- In StarCraft, Tychus Findlay was put on ice until Mengsk needed him to get close to Raynor and kill Kerrigan.
- In the background the Koprulu Sector was settled by Sleeper Ships loaded with frozen inmates from the United Earth Directorate's concentration camps.
- Escape from Butcher Bay: In Butcher Bay prison, the most dangerous and escape-prone convicts are kept in cryogenic suspension for the duration of their sentences and let out only a few minutes each day for exercise in a sealed room. Which is all that Riddick needed in order to escape.
- The Heroes of Might and Magic series has a fantasy variant, when Archibald Ironfist is Taken for Granite as punishment for trying to claim the throne from his brother Roland. He's later revived in Might and Magic 6 because his knowledge of magical rituals is needed to defeat the villains, and claims that since he was unaware of the passage of time during his 'incarceration', he doesn't feel like he's been punished at all.
- Command & Conquer: Red Alert 3: At the end of the Allied campaign, Cherdenko and Krukov are both captured and sentenced to being cryongenically frozen.
- Star Wars: The Old Republic: The area of Belsavis known as The Tomb is a series of stasis chambers where the Rakata kept the things they feared most on ice for millenia. The Republic began sending their most dangerous prisoners down there as well, including the Dread Masters.
- In Final Fantasy VIII, Esthar's government is afraid of Sorceresses and puts them in cold sleep. The reason for that is if a Sorceress dies, she passes her powers to someone else, and if she is frozen, she's removed from the succession cycle.
- The Citadel in Adventure Time is a prison for those who commit "cosmic crimes". Criminals there are kept frozen in crystals made of some kind of life-prolonging goop.
- Happened to most of the villains in the penultimate episode of Teen Titans.
- On the Gravity Falls episode "Into the Bunker," the gang finds a bunker that apparently belonged to the Author of the journals. Apparently, s/he also created experimental creatures, one of which (a Shapeshifting monster) is loose. After defeating it, they put it into one of these.
- On SpongeBob SquarePants, this happened to Man Ray in an episode of Mermaid Man and Barnacle Boy. Except he was frozen into a block of tartar sauce. SpongeBob and Patrick accidentally free him, and try to teach him how to be good.