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- Tales Of The Black Freighter, the Story Within A Story in Watchmen: a tragic little pirate story about a man who gets so paranoid about pirates attacking his home town, that he goes crazy and ends up killing everyone himself, interesting in its own right, and then you realize that It's a metaphor for the villain's plan to "save the world" by murdering thousands, and further hints that his plan is totally in vain.
- Scott Pilgrim is one big allegory for growing up, taking responsibility for your mistakes, and learning something from them instead of pretending they never happened.
- The 1954 film Gojira was made as an allegory about the horrors of the atomic bomb.
- Much of the Star Wars Prequel Trilogy, especially Revenge of the Sith, is an allegory for the Nazi rise to power, Chancellor Palpatine being Hitler and Obi-Wan and Anakin the Goerring brothers, with the latter also representing all Germans. Senator Amidala was representative of democracy, and possibly the extermination of Jews, though the actress' family history is probably a coincidence. There is also the Stormtroopers being, in both cases, first brought in by the Chancellor for the Republic and then used as his personal army. The Separatists may also be representative of the Real Life Spartacists. This is one of many evidence articles on the internet for this.
- It's also been suggested that the entire Star Wars series is an allegorical history of the 20th century. The first three films represent the first half - Episode I represents the First World War, Episodes II and III the Second World War, and the Original Trilogy the Cold War. The Jedi and the Empire/Republic represent the Americans and Russians, though which way round they are depends on your point of view.
- The Ascent, about two Russian soldiers during World War II who get captured by the Germans, turns into an allegory about Christ and Judas. One of the soldiers dies nobly, sacrificing himself on the gallows as a beatific light shines down on him. The other elects to join Those Wacky Nazis and ends the film a hollow wreck of a man. This is made overt when the collaborator is even called "Judas" by the villagers after he helped lead his old friend to execution.
- Hypocrites is a film about, well, hypocrisy, and how easy it is to be a hypocrite and ignore the truth, as shown by a pastor attempting to lead his flock to Truth. The "narrow way" to Truth is an actual narrow way that leads up a very steep mountain, while the "broad road" that leads away from Truth is, yes, an actual broad road. One parishioner is too greedy to find the way to Truth, which is shown by him carrying a bag of gold coins that bursts open. After nobody makes it up to the mountain with the pastor, he liberates a figure called the Naked Truth—played by a nude actress—to bring the Truth to them.
- Animal Farm - Animals oust the human farmer and take over the running of the farm, as an allegory for the rise and corruption of Communism in the USSR.
- Battle Royale is considered an allegory about humans (not just teens) and what they're willing to do in order to survive.
- The Chronicles of Narnia is widely regarded as heavy-handed Christian allegory, but it's actually averted - Aslan literally is Jesus.
- The Lion, the Witch, and the Wardrobe re-enacts the crucifixion story with Jadis the White Witch as Satan, Aslan as Jesus (of course), and Edmund as the unsaved sinner in need of redemption. Lucy and Susan also fill in for the Marys who attend Christ's death and burial.
- In The Voyage of the Dawn Treader, Eustace's transformation back from a dragon, and subsequent reform of character, is an allegory for the conversion of St. Paul.
- The Last Battle is an almost 1:1 retelling of the Second Coming, complete with a false Aslan and his "prophet", a massive war, and everyone going to heaven at the end.
- The more proper allegory written by C. S. Lewis is The Pilgrim's Regress, dramatizing his intellectual conversion to Christianity and an Author Tract for his love for Romanticism. An obvious allusion to Bunyan in the title.
- Hinds Feet On High Places - For the process of converting to Christianity
- Pilgrim's Progress - For the process of converting to Christianity
- Lord of the Flies for war and its causes, the island acting as a microcosm for the World at the time.
- The Divine Comedy. The trip through Hell, Purgatory, and Heaven is also a trip through the human mind.
- Edmund Spenser's The Faerie Queene is an allegory of virtues. It also has an interwoven political allegory.
- Dr. Seuss is on record for saying that his story "The Sneetches" is an allegory for antisemitism.
- The major arcana in a Tarot deck are said to represent the development of an unenlightened seeker through enlightenment until fulfillment.
Religion and Mythology
- Hyperdimesnion Neptunia is an allegory for the Console Wars, with the consoles personified as Moe Anthropomorphisms, and one of the villains representing Digital Piracy Is Evil. A non-canon bad ending of Hyperdimension Neptunia mk2 is a metaphor of the effects of a monopoly effects on the videogame industry and how it would eventually lead it to crumble, and the back-story of one of the characters in Hyperdimension Neptunia Victory is an allegory for The Great Video Game Crash of 1983. Most of the time it can be taken as a comedy with loads of references and in jokes related to gaming.
- Balance is about five men precariously perched on a platform that is balanced precariously at the center. It's an obvious message about the need for cooperation and the danger of selfishness.
- Bear Story is about a bear who is forcibly kidnapped from his family and enslaved to a circus. The whole cartoon is an allegory for how families were separated from each other by the kidnappings and disappearances perpetrated in Chile by the dictatorial regime of Augusto Pinochet. The bear is inspired by the story of the director's grandfather, who was snatched away from his family and eventually exiled.