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  • 3rd Rock from the Sun gives a humorous example. Dick is outraged when he discovers Mary has been getting love letters from a mysterious admirer, and discovers that it's actually his Arch-Enemy Liam, who seduced Mary and tried to destroy Earth once before and is back to give both another shot.
  • In the final season of 24, the Russians, who were behind the deaths of Omar Hassan and Renee Walker, were hijacked by Season 5's Big Bad, Charles Logan. Season 7 had teased Logan pulling this by constantly referencing him and having Tony go on a Roaring Rampage of Revenge, but unfortunately, it turns out that some random guy named Alan Wilson was Tony's target and the one behind multiple conspiracies.
    • Also, in The Game, Max, the man behind Season 2's events, is the Big Bad.
    • Subverted in season six; it seems like the Chinese are pulling this, but Phillip Bauer turns out to be the actual antagonist.
    • In the Live Another Day miniseries, Cheng Zhi returns and pulls this properly, taking over the Big Bad position from hacker Adrian Cross almost immediately after he appeared to step into it.
  • Agents of S.H.I.E.L.D.: In a major bit of Arc Welding with the main Marvel Cinematic Universe, the first season's villain organization "Project Centipede" is revealed to be a branch of HYDRA.
  • Angel: Lindsey works alongside his lover, Eve, to play Angel and Spike against each other, with the hope of usurping Angel's position at the firm and (if we're aiming high) buying his way into the Circle of the Black Thorn.
  • In four out of eight seasons of Arrow, a seasonal Big Bad is revealed to have some connection to the League of Assassins.
  • Buffy the Vampire Slayer:
    • It turns out the source of various nasty events happening around and to Buffy's circle of friends, not to mention the forces of good around the world, are the work of The First, who appeared in Season 3 as a Monster of the Week and is now the final villain of the show.
    • In the Season Eight comics, it turns out Twilight is actually Angel
    • Dark Willow reappears in the Time of Your Life arc of Season 8.
  • Happens in the fifth season of Chuck. Clyde Decker is set up at the beginning of the season to be operating a conspiracy by a faction of the CIA intent on destroying Chuck Bartowski, his friends, and his family (having claimed in season 4's finale that all the villains they'd gone up against — FULCRUM, The Ring, and Volkoff Industries — and Chuck's family were all the pawns in a larger game) . Midway through the season it's revealed that Daniel Shaw, who underwent a Face–Heel Turn halfway through the third season and tried to take over the CIA before the team stopped him, has been pulling Decker's strings (via blackmail over Decker's corrupt past) all along. And then that gets hijacked by Quinn, who it's revealed was behind everyone Chuck had been dealing with (or at the least was working for all the other antagonists offscreen) out of spite because Chuck "stole" the Intersect from him (Quinn was selected to be the Intersect agent, but after Bryce stole it and sent it to Chuck, Quinn was sent into the field without it, captured, and tortured. Yes, there was a bit of Sanity Slippage involved).
  • Cobra Kai season 5 ends with Terry Silver's defeat, only for everyone to hear the news that Kreese has escaped from prison.
  • In the denouement of Season 12's events on Criminal Minds, we learn of a twofold version of this. The main villain at large during this season is Scratch, a psychopath who uses drugs to induce hypnosuggestion in others so that they do his dirty work for him. Halfway through the season, Dr. Spencer Reid gets framed for murder and imprisoned after being drugged in the same way. However, someone is actually replicating Scratch's M.O. down to the letter to make it appear to be him. This someone turns out to be the daughter of a father the BAU was forced to kill for refusing to stand down, having come out of Witness Protection and flipped her lid; she, in turn, is being used by someone else who wants revenge on Spencer for lying to her about her own father just to get her arrested, and who has gone absolutely starkers from solitary confinement and taken so many levels of crazy that she decided to subject Spencer to the same type of torture in the prison environment.
  • The majority of new villains introduced on Days of Our Lives in the past 15 years have been revealed to be working for Stefano Di Mera.
  • One loses track of how many Doctor Who serials open with a seemingly original villain who turns out to be a pawn of the Daleks, the Cybermen, the Sontarans, or the Master. Or sometimes more than one of them (and sometimes they hijack each other). The production team would later admit that they overdid it in the eighth series (which introduced the Master), making him the primary villain in all five serials.
    • For the first four episodes of "The Invasion", Tobias Vaughn appears to be the Big Bad: He makes coy references to "allies" and is clearly hatching out something, but he seems to be the one driving the plot. Then it turns out that what he's hatching out are Cybermen, who quickly prove to be the bigger threat.
    • "Frontier in Space" does it twice: the Ogrons are quickly revealed to be working for the Master (in Roger Delgado's last story before his death), who turns out in the final episode to have been working for the Daleks.
    • In the fourth-episode cliffhanger of "The Invasion of Time", the Vardans are defeated...and then it turns out that they were tools for the Sontarans, who turn up to take matters into their own hands.
      • The Sontarans do this again in Series 13 only in a Big Bad Ensemble capacity, hijacking the antimatter wave "The Flux" to wipe of several Daleks and Cybermen fleets.
    • Subverted in "The Ultimate Foe", in which it turns out that the Master was responsible for the events that led to Earth's devastation and the Doctor's trial...and then the Valeyard, a completely new villain, turns out to have taken advantage of the Master's actions to set himself up as the story's real Big Bad.
    • In Series 1, it turns out the Daleks were leading the Mighty Jagrafess into manipulating the Human Empire's population. Subsequently, they were behind the Gamestation's gathering of humans for their deadly game shows. Then the Cybermen hijacked Torchwood, and the Cybermen, Daleks, Sontarans, and a few others hijacked the Pandorica. Yup, still going strong.
    • In Series 7, the Great Intelligence being behind everything would count as this. Turns out the villains in "The Snowmen" and "The Bells of Saint John" were just The Dragon to him.
    • In Series 8, it turns out that Missy is short for "Mistress" — she's the Master, come back yet again.
    • Another double example in "World Enough and Time", where the creepy patients are revealed to be early incarnations of the Cybermen — and it turns out the Master is responsible.
    • Done twice in Series 12 of the new show. Firstly, the villain of Spyfall is revealed to be the Master using the identity of MI6 agent O in Part 1. Then the Master turns up again to literally hijack Ashad's plot in "The Haunting of Villa Deodati/Acension of the Cybermen/The Timeless Children".
    • Spinoff Class had a huge example at the end of its first and only season — the Governors are an apocalyptic Path of Inspiration working for the Weeping Angels.
  • The Flash (2014):
    • In Season 5, the Big Bad is the metahuman Serial Killer Cicada. However, in the last episodes of the season, it's revealed that Eobard Thawne the Reverse-Flash has been faking his apparent atonement, and that the entire season was a Batman Gambit to manipulate Nora into altering the timeline enough that he could escape his execution in the future. When this succeeds with Cicada's defeat in the season finale, Thawne serves as the Final Boss of the season.
    • The Armageddon storyline in Season 8 sees alien psychic Despero travelling back in time to kill Barry Allen because Despero believes that Barry will cause a cataclysmic event in 2031 (the time period when Despero came from). However, once Barry travels to that future to see for himself, the man responsible is once again Eobard Thawne, who orchestrated a "Reverse-Flashpoint" where he replaced Barry Allen as the Flash in history and turned the entire world against him.
  • Gotham: The series does a good job establishing the origin story of many heroes and villains of the Batman mythos, but the moment the Valeska twins appeared, everybody knew that it was going to come down to Batman vs. The Joker and the series did not disappointed.
  • The second, third, and fourth volumes of Heroes were hijacked by Sylar, who, while not the mastermind of the first volume, was the unwitting means to Linderman's end, and much more deadly. The volumes set up their Big Bad as, in order, Adam Monroe, Arthur Petrelli, and Emile Danko, only for them to be dealt with a couple episodes before the end of the volume, generally unceremoniously. Sylar's MO is to pop out of nowhere at around that time and catch everyone with their pants down, brewing some mayhem for an episode or two until the heroes get him under control...at least until the next volume begins.
    • This is made all the more predictable by each volume's insistence on having a major plot thread centering around Sylar regaining his powers, deciding he'd rather be evil, or remembering who he is.
    • Ultimately subverted in the final volume, where Samuel Sullivan is established as the Big Bad fairly early on and keeps that title right up until the finale. Not only does he easily defeat Sylar the one time they fight, but Sylar has a Heel–Face Turn that actually seems to stick this time.
  • Kamen Rider:
    • Whenever the series pulls off a Massive Multiplayer Crossover, you can be sure that the series' original Nebulous Evil Organisation, Shocker, would have its name all over the plot.
    • In the Showa era, Shocker's Great Leader was either directly behind or revealed to be secretly puppeteering most of the evil organizations the Kamen Riders faced. It's easier to list the organizations he wasn't behind, that being Dogma and Jin Dogma in Kamen Rider Super-1note  and Gorgom in Kamen Rider BLACKnote . He's for the most part stopped hijacking the plot in the Heisei era, but whenever there's a gathering of villains, nine times out of ten it's him who's leading the charge.
    • It seems Kamen Rider Double, OOO, and Fourze are getting hijacked by Foundation X, as they were involved with the Transformation Trinkets of each season in some way. That being said, Foundation X's involvement in the shows eventually tapered off after a while, though they reappear every so often (primarily in teamup movies/specials).
  • Super Sentai
  • In Lost, the first antagonist encountered in the series is the Smoke Monster, which had been terrorizing the survivors since they first crashed on the Island, long before we even know about the Others. Early on, it was assumed that it was a raging beast, but later, we learned it was much more than that when it was discovered that it could assume the form of deceased characters. However, it only appeared in a few episodes and seemed to take a backseat to other antagonists such as Ben, the Others, Widmore, etc. After seasons of debating who the Big Bad would be, the season five finale introduced an unnamed man, The Man in Black, who is Jacob's enemy, vowing to kill him, and at the end of the episode, we learn he was manipulating everyone, especially Ben and Locke, the whole time in order to accomplish this. It is revealed in the season six premiere that this man was none other than the Smoke Monster, making him the Big Bad since the very first episode.
  • During the Monk season 6 finale, "Mr. Monk is on the Run", Monk is accused of murder and escapes captivity, hoping to prove his innocence. Monk soon figures out that Sheriff Rollins, the very officer that arrested him and has been in pursuit ever since, is the actual murderer, and further investigation leads Monk to discover a conspiracy masterminded by his nemesis Dale "The Whale" Biederbeck.
  • At the end of season 4A of Once Upon a Time, after The Snow Queen sacrifices herself to undo her curse in the penultimate episode, Rumpelstiltskin takes over as the main antagonist for the final episode and continues this role into the second half of the season with various other previously seen and new villains along the way.
    • The main villain for most of Season 7 was Mother Gothel, with Dr Facilier as a secondary antagonist. With Gothel defeated, Facilier looked set to be the villain of the two-part series finale, only for him to be murdered by the Wish Realm Rumpelstiltskin in the last seconds of the preceding episode.
  • Evox, the Big Bad of Power Rangers Beast Morphers, is revealed to be an reincarnation of a previous series Big Bad, specifically Venjix, the Big Bad of Power Rangers RPM.
  • Resurrection: Ertuğrul has this happen in season 4. While he has no direct connection to most of the villains that showed up in the season beforehand, but Baiju Noyan’s (The antagonist of season 2) presence near the end comes as a surprise both to the viewers and to Ertugrul and his alps.
  • In the Robin of Sherwood episode "The Enchantment", the witch Lilith turns out to be the girlfriend of Simon de Belleme, the black magician who was the villain of the show's first episodes, and her true objective is to resurrect him.
  • The first series finale to Sherlock reveals a certain someone to have been behind every mystery (all three of them) up to that point, in some way or another. The same happens in episodes 1 and 3 of series 2. He wasn't behind any of the events of series 3 (likely due to his being dead), but he does reappear at the end of the series 3 finale, in such a way to make everyone doubt whether he actually died at all. And then we get confirmation that yes, James Moriarty really is dead, but his role as The Heavy for Eurus Holmes still leaves his fingerprints all over the final season.
  • The Granada adaptation of the Sherlock Holmes mystery "The Red-Headed League" ultimately connects its mastermind with Holmes' nemesis Moriarty. No such connection exists in the original story. However, the real-life crime that inspired "The Red-Headed League" was masterminded by the man who inspired Moriarty.
  • In The Adventures of Sherlock Holmes and Doctor Watson, the three episode arc concerning Moriarty starts with an adaptation of "The Adventure of Charles Augustus Milverton", who apparently was part of the gang, since Holmes caught the Professor with the help of some documents the bastard had.
  • Stargate SG-1: In season 8, Ba'al takes control of Anubis's remaining forces after the destruction of Anubis's fleet during the invasion of Earth, and uses his superior Kull Warriors to successfully wage war on all the other Goa'uld combined. Anubis reappears on Earth, but gets stuck on a frozen planet in a dying host body. At the end of the first part of "Reckoning", Ba'al reveals to O'Neill that Anubis is back in command of the largest Goa'uld faction, and that he was serving him for a while now.
  • Star Trek:
    • In the Star Trek: The Next Generation episode "Descent", the rogue Borg the Enterprise has been chasing turned out to be led by Data's Evil Twin Lore.
    • In Star Trek: Deep Space Nine, an episode investigating the Orion Syndicate has a big reveal that they have been working for the Dominion.
    • In season 3 of Star Trek: Picard, "The Face" that's been barking out orders at Vadic is eventually revealed to be the Borg Queen.
  • The conclusion of Tin Man reveals that the Big Bad Princess Azkadellia is actually a descendent of Dorothy Gale and was possessed by the spirit of the original Wicked Witch as a child. D.G. (who's actually Azkadellia's sister) frees her from the Witch's influence in the last episode's final act, and she reverts to her original personality.
  • In one episode of The Twilight Zone (1959), a neo-Nazi campaign is hijacked by a mysterious phantom who delivers excellent advice on public speaking. It turns out that the phantom is none other than Adolf Hitler. When Hitler reveals his identity to the neo-Nazi leader, he stops giving advice and starts giving orders.
  • In the tokusatsu series Ultraman Nexus, there is a constant reference of "The Unknown Hand" being the mastermind behind everyone of the Space Beasts actions, as well as reoccurring baddie, Dark Mephisto. Once the final monster is destroyed, the unknown hand reveals himself to be an entire evil Ultra known as "Dark Zagi".
  • The miniseries of The X-Files seems to have the Cigarette Smoking Man returning Back from the Dead and as the Big Bad once again.

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