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Season 1
- Power
- The Glass Ceiling: A judge and a lawyer who convicted a small-time gangster are both murdered. Murdoch investigates and suspects the gangster may still be alive, but he struggles to find all the information needed to solve the case.
- The Knockdown
- Elementary, My Dear Murdoch
- 'Til Death Do Us Part
- Let Loose the Dogs
- Body Double
- Still Waters
- Belly Speaker
- Child's Play
- Bad Medicine
- The Prince and the Rebel: While investigating the murder of an Irish girl, Murdoch uncovers a plot to kill the visiting Prince Alfred and must face a fanatical group of terrorists known as the Brotherhood.
- The Annoying Red Planet
Season 2
- Mild Mild West
- Snakes and Ladders
- Dinosaur Fever
- Houdini Whodunit
- The Green Muse
- Shades of Grey: Murdoch and Dr. Ogden's relationship is strained when they have different opinions about abortion.
- Big Murderer on Campus
- I, Murdoch
- Convalescence
- Murdoch.com
- Let Us Ask the Maiden
- Werewolves
- Anything You Can Do...
Season 3
Season 4
- All Tattered and Torn: Murdoch clashes with Julia's replacement, Dr. Francis, when a body is found in concrete.
- Kommando
- Buffalo Shuffle
- Downstairs, Upstairs
- Monsieur Murdoch
- Dead End Street
- Confederate Treasure
- Dial 'M' for Murdoch
- The Black Hand
- Voices
- Bloodlust
- The Kissing Bandit
- Murdoch in Wonderland
Season 5
Season 6
Season 7
- Murdoch Ahoy
- Tour de Murdoch
- The Filmed Adventures of Detective William Murdoch
- Return of Sherlock Holmes
- Murdoch of the Living Dead
- Murdochophobia
- Loch Ness Murdoch
- Republic of Murdoch
- Midnight Train to Kingston
- Murdoch in Ragtime
- Journey to the Centre of Toronto
- Unfinished Business
- The Murdoch Sting
- Friday the 13th, 1901
- The Spy Who Came Up to the Cold
- Kung Fu Crabtree
- Blast of Silence
- The Death of Dr. Ogden
Season 8
- On the Waterfront: Part 1
- On the Waterfront: Part 2
- Glory Days
- Holy Matrimony, Murdoch!
- Murdoch Takes Manhattan
- The Murdoch Appreciation Society
- What Lies Buried
- High Voltage
- The Keystone Constables
- Murdoch and the Temple of Death
- All that Glitters
- The Devil Wears Whalebone
- The Incurables
- Toronto's Girl Problem
- Shipwreck
- Crabtree Mania
- Election Day
- Artful Detective
Season 9
- Nolo Contendere
- Marked Twain
- Double Life
- Barenaked Ladies
- 24 Hours Til Doomsday
- The Local Option
- Summer of '75
- Pipe Dreamzzz
- Raised on Robbery
- The Big Chill
- A Case of the Yips
- Unlucky in Love
- Colour Blinded
- Wild Child
- House of Industry
- Bloody Hell
- From Buffalo with Love
- Cometh the Archer
Season 10
- Great Balls of Fire, Part 1
- Great Balls of Fire, Part 2
- A Study in Pink
- Concocting a Killer
- Jagged Little Pill
- Bend it like Brackenreid
- Painted Ladies
- Weekend at Murdoch's
- Excitable Chap
- The Devil Inside
- A Mutdog Mystery
- The Missing
- Mr. Murdoch's Neighbourhood
- From Murdoch to Eternity
- Hades Hath No Fury
- Master Lovecraft
- Hot Wheels of Thunder
- Hell to Pay
Season 11
- Up From Ashes
- Merlot Mysteries
- 8 Footsteps
- Canadian Patient
- Dr. Osler Regrets
- 21 Murdoch Street
- The Accident
- Brackenried Boudoir
- The Talking Dead
- F.L.A.S.H.!
- Biffers and Blockers
- Mary Wept
- Crabtree à la Carte
- The Great White Moose
- Murdoch Schmurdoch
- Game of Kings
- Shadows are Falling
- Free Falling
Season 12
- Murdoch Mystery Mansion
- Operation: Murder
- My Big Fat Mimico Wedding
- Murdoch Without Borders
- The Spy Who Loved Murdoch
- Sir. Sir? Sir!!!
- Brother's Keeper
- Drowning in Money
- Secrets and Lies
- Pirates of the Great Lakes
- Annabella Cinderella
- Six of the Best
- Murdoch and the Undetectable Man
- Sins of the Father
- One Minute to Murder
- Manual for Murder
- Darkness Before the Dawn Part 1
- Darkness Before the Dawn Part 2
Season 13
- Troublemakers
- Bad Pennies
- Forever Young
- Prodigal Father
- Murdoch and the Cursed Caves
- The Philately Fatality
- Toronto the Bad
- The Final Curtain
- The Killing Dose
- Parker in the Rye
- Staring Blindly into the Future
- Fox Hunt
- Kill Thy Neighbour
- Rigid Silence
- The Trial of Terrence Meyers
- In the Company of Women
- Things Left Behind
- The Future is Unwritten
Season 14
- Murdoch and the Tramp
- Rough and Tumble
- Code M for Murdoch
- Shock Value
- Murder Checks In
- The Ministry of Virtue
- Murdoch Escape Room
- The Dominion of New South Mimico
- The .38 Murdoch Special
- Everything is Broken Part One
- Everything is Broken Part Two
Season 15
Season 16
Season 17