These are what we call the 'YMMV items.' Things that some people find in this work. We call them 'your mileage might vary' because not everyone sees these things in the same way. This starts discussions in the trope lists, a thing we don't want. Please use the discussion page if you'd like to discuss any of these items.
Moral Event Horizon: Dr. Kornbluth calls out the other scientists, particularly the leader Dr. Ross, for planning to dissect her. But they merely insult him for "not being a real scientist". This helps lead to his Heel-Face Turn afterwards.
Which makes Ross an idiot since he could have gotten into the history books as the one who established contact with a new race.
MST3K Mantra: Don't try to figure out how Madison is able to read a map despite having had no previous contact with the English language.
Unfortunate Implications: Allen goes into the bathroom while Madison is taking a bath, despite her fervent pleas that he not do it.
This should be explained a bit. Allen merely asked if he could come in. It was Madison's panic and the thud when she suddenly fell out of the tub that got him so worried he broke down the door. Besides, as the scene ending shows, he didn't see any reason for her to suddenly be shy given what all they had done.