Cowboy Bebop has a surprising amount of this between Faye and Ed, ranging from Ed affectionately calling her "Faye-fairy" (cute, but relatively innocuous) to Faye kissing Ed on the mouth in a very weird attempt to wake someone up.
Don't forget Faye's super manipulative behavior towards Ed, is Ed that crazy to believe Faye, or is Ed...
At the end of "Jamming with Edward", Faye said, off screen, "Hey you're a girl." about Ed; ummm, how did she discover that little tidbit?
I'm sorry, but are we analyzing Cowboy Bebop's Ho Yay without mentioning Grencia/Vicious? Or 'Gren', as how Vicious call him. It's even more visible if you have in mind that Grencia points out to Faye that he is not interested in women, twice.
To be fair there is quite a bit of this implied in the Spike/Vicious/Julia backstory as well.