At one point, the Muppets in Gonzo's rescue party stand on each other's shoulders (Kermit on Fozzie and Pepe on Miss Piggy) to disguise themselves as doctors. This makes the size of their heads look out of proportion to the size of their bodies, and it's made all the more funny when they come across a real doctor, who gives them a weird look and walks away. The best part is Kermit's "What in the world?" when they find Gonzo strapped to a gurney, Rizzo chewing through the straps, and Dr. Phil dramatically screaming in fear.
The commentary track, where the director, Gonzo, and Rizzo all riff on the movie and tell stories about making it (like that the dream sequence at the beginning was actually shot inside Gonzo's head).
Pepe: Hey Kermit, when are you going to fix the oven, okay? Kermit: What's wrong with the oven? (massive offscreen explosion) Pepe: That. EnterSwedish Chef: ItsderbigKABLOOM!
The scene where Gonzo, right after being struck by lightning to talk with the Cosmic Fish, rushes into Kermit, Clifford, Rizzo and Pepe's poker game...and electric discharge sets Rizzo's cards on fire.
Pepe:Dos Deuces. The Prawn Cracker wins.
Rizzo: A PAIR OF TWOS? I swear, I had four aces, I really did! Note He really did.
Pepe:: (singing) You got know when to hold 'em...and when to fold 'em...
Miss Piggy and reporter Shelley, going toe to toe. Also counts as a moment in awesome for Piggy!
"The Cosmic Fish have spoken to me! I'M FROM OUTER SPA-HA-HAAACE!" said by a hysterical Gonzo, who is smoking from just being struck by lighting. But that's not the funny part. It's the lack of reaction from Rizzo, Pepe, Kermit, and Clifford, who are playing poker. As far as they're concerned, Gonzo is doing nothing out of the ordinary.
When the government agency is examining the evidence of Gonzo's people looking for him with the "Are you there?" messages. The last one shown says "Are you three?" and the line that follows is "We believe this one is a spelling mistake."
When Ed is trying to interrogate Gonzo, he keeps answering with "I don't know." When he tells him not to answer that again, Gonzo replies with, "I know not."
While the Muppets escape from C.O.V.N.E.T., they decide to use the "door in a jar" Bunsen gave them. Fozzie wastes time by reading the instructions, prompting Kermit to yell at him to open the jar.
Then when Fozzie spills the jar's contents, the door turns out to be much smaller than expected: