The end of the Dragonfall campaign. Finally ending it all after days of sweat, blood, and tears.
Eiger ripping out the throat of a man who caught her while reloading. With her tusks!
The whole crew kicks all sorts of ass during the attack on the Kreuzbasar. They've been caught flat-footed and they're all divided across town, separated between large groups of heavily-armed mercenaries. They still manage to band together, kill every hostile down to the last man, and defuse all the bombs set to blow up in the sewers. It's a rare moment of genuine heroism from the shadowrunners where they save hundreds of innocent lives, and you get to control all of the original crew at the same time (including Dante, who just Took a Level in Badass).
Wiping out the Humanis camp and preventing them from carrying out their False Flag Operation. During the quest, with Dietrich in tow, you tell his nephew Alexander that you respect his choice, be it leaving Humanis or remaining in it. Alexander then mans up and joins his uncle (and you) in killing the hostiles.
One mission has you storming the research center of one of the major corporations, killing their researchers, freeing some prisoners, and setting the entire building to explode. It's a hard as hell mission that required a lot of prep work but you will be on top of the world when that building goes up in smoke. The fat paycheck that comes with it is a nice touch too. Double points if you manage to get to the lab without tripping the alarm. That involves passing an interrogation while Blood Magic is hurting you.
The cherry on top was that this was a morally good act (said corporation is Aztechnology, known for their Black Magic and an attitude most other megacorps are repulsed by; the place you blew up was researching ways to clone a Human Sacrifice), and in the life of a Shadowrunner, that comfort is a VERY rare luxury. Taking the more moral road can result in a Shadowrunner's reputation suffering and angering clients. To be paid to do the right thing just feels wonderful.
Meta example. Harebrained Schemes put up a Kickstarter for the Hong Kong campaign, in order to add more to it. They asked for 100,000 dollars, with 35 days for it to be raised. It was raised within two hours. Two weeks later? 700,000 dollars and they still had three weeks to go. Their last stretch goal? 1 million dollars for an additional 4-5 hour epilogue campaign, which they also made.
In Hong Kong, one way to defeat the Big Bad is to outwit it by using its own rules against it. Specifically, you force Qian Ya to retreat to its home dimension by threatening to use the machine that summoned her to summon all of its siblings. When she/it incredulously asks you what makes you think you'll survive an encounter with the other Yama Kings when even one is beyond your ability to kill, you can reply that you won't, but that won't stop the others from killing her for stealing all their food. Defeated, Qian Ya tries to bargain with you by taking the souls of her followers with her, but as Yama King law states that any concession in an argument forfeits all rights, you can order the god-queen home empty-handed. Even better is responding to her asking how you know the Yama Kings' laws, and you can either tell her... or tell her that, "You'll spend the rest of eternity wondering."
Helping Ku Feng to unleash her true potential will unlock her for a segment in Kowloon Walled City.
Taking A Third Option in the Whistleblower run. Rather than side with either your original Mr. Johnson (who lied to you and is planning to betray you) or the Seoulpa Rings (who threaten you and are planning to betray you) you can decide to fight both sides in a glorious three-way fight. This not only gets you the greatest possible reward for the run, it also gets your character a lot of respect from both their teammates and Kindly Cheng, who strongly approves of the message you have just sent: nobody fucks with Cheng's runners.
You can also choose to use the good old You Have Outlived Your Usefulness trick, by pitting one side against the other, and then mopping up the weakened side afterwards.
Shadows of Hong Kong continues the "screw both sides" tradition, but this time, the battle is the toughest bar none in the Shadowrun Returns games.
Another reason why the Whistleblower run is awesome is that it threatens to reveal the secrets behind the elves' longevity. The elves had schemed long and hard to stop any relevant research from surfacing; with this run, you (through Kindly Cheng) will sell these secrets to the highest bidder. The Schockwellenreiter would be proud.
At the end of the Prosperity Tower run, you have to face one last group of mooks, whose captain says that they're the last line of defense. You can then have your character point out that they're the last line of defense because you killed the other lines. They wisely back down.
The run itself is the epitome of your showdown with Josephine Tsang's men. With charismatic words, a sabotage, some hacks and academic (or magical) knowledge, you negotiate your way to the security systems on 3 floors and shut down the alarms (while releasing a creature which rather defies description). If you are in a mood for looting (be it nuyen or an armoury), you clear out 2 floors of Tsang guards AND kill a vice-president who smugly thinks that he can do a deal with you ( He's a mage btw). And that's before the havoc you raise in Lab Twelve, leading to the moment mentioned above. The run is one of theDamn, It Feels Good to Be a Gangster moments in Hong Kong.
The sheer Refuge in Audacity that is the visit to the Tiger's Den. Like Prosperity Towers above, you can turn it into a lucrative heist. You can charm your way through the 1st floor, securing and then destroying evidence in front of a prisoner for nuyen. Hell, the main reason you are even inside the detention area is that you bribed a police officer to get in! You can also use drones to sneak into an interrogation room and dispose of a police officer without raising the alarm. The suspect who is being beaten then gives you the code to his briefcase of drugs, and then proceed to loot the dead officer's electronic identification so that he may escape. The fun continues on the second floor, where the HKPF springs their trap on you, only for Qiu to turn the tables with her own surprise. You then escape, but not before clearing out the medical station and the armoury, while laying waste to the SDU.But Wait, There's More! If you choose to escape via the parking lots, you can (via rigging or a password obtained from a previous Matrix run) set the vehicles to explode on demand. See the pursuers taking cover near a vehicle? BOOM. There is an achievement if you blew up all the vehicles.