These are what we call the 'YMMV items.' Things that some people find in this work. We call them 'your mileage might vary' because not everyone sees these things in the same way. This starts discussions in the trope lists, a thing we don't want. Please use the discussion page if you'd like to discuss any of these items.
The scene in the movie, where on the way to Cecilia's funeral, the graveyard workers are holding a strike protest at the entrance. Mr. Lisbon just solemnly gets out of the car, talks to them, and they move aside, stunned about the circumstances of his daughter's death.
Mr. Lisbon going into Cecilia's room, possibly imagines her ghost, and discovers that the window where she plunged to her death is open. Closing the window, he clearly bends his head down in distress. Then he finds Bonnie, reassuring him that the yard workers moved the gate where Cecilia impaled herself.
Lux's final scene. The boys are too excited at the prospect of rescuing the girls that they don't really seem to notice that Lux is incredibly glum, as if she knows already what happened to her sisters and knows she's next.