These are what we call the 'YMMV items.' Things that some people find in this work. We call them 'your mileage might vary' because not everyone sees these things in the same way. This starts discussions in the trope lists, a thing we don't want. Please use the discussion page if you'd like to discuss any of these items.
Demonic Spiders: SF Dragon fighters are tiny, absurdly manoeuvrable, and damnably well armed and shielded, rendering them ridiculously hard to catch and destroy if they don't get into a close-ranged dogfight; and even then, they're damned near impossible to hit, as they can literally fly circles around any ship in either game. Their only weakness is that their armor is made of tin, but putting on primary weapons that are good against shields turns most other fighters (which focus on hull strength instead of shield strength) into Demonic Spiders of their own. The developers damned well knew it, too, because in one mission two full wings of Dragon fighters pop up at long range just to scare you before the detonation of the Meson Bomb annihilates them.
In either game, if you are already very good at swatting Dragon and Manticore fighters, then this title belongs to the Nephilim or Seraphim bombers; most of the time, these are the very things responsible for Mission Failed. They are slow and big, but are so ridiculously armored and shielded they can shrug off up to three hits from Trebuchet heavy missiles. In addition, the Nephilim has seven guns linked to one gun slot, giving it a ridiculous rate of fire. The Seraphim has more guns, but in 3 slots. Both bombers have a pair of turrets that can fire at you even when you are not in front of them.
If you're defending capital ships in the second game, you will learn to loathe Lilith-class cruisers. Their main beam cannon is extremely strong for a ship of that size, and their small size means that other capital ships will have a hard time hitting it when shooting back. They also look near-identical to the Cain-class, which is a total pushover and easy to kill.
Ensemble Darkhorse: Lieutenant-Commander Snipes. Probably due to being the only named pilot in the story, and getting the best lines in the game.
Even Better Sequel: The original game received reviews that, while mostly positive, were nothing particularly outstanding; it was considered a good game, but not a great one. Freespace 2, on the other hand, was positively heaped with praise, received numerous 'Game of The Year' awards, and is still widely played even to this day, over a decade after its release.
Due to the fact that Freespace 2 was one of the last games of its kind ever released, some fans jokingly claim that it was so good it killed the entire genre, since nothing else would ever be able to compete with it. (The real reasons the Space Sim genre died out are a lot more complex.)
The original Silent Threat has now been supplanted by a (extremely well-done) fan-made revision of the entire thing called Silent Threat: Reborn, which keeps the storyline largely intact while adding enough to it to make it good, and has pretty much been unanimously declared to be superior to the original product, thus pulling the story out of Fanon Discontinuity.
Good Bad Bugs: In Argonautica, you have to defend GTD Aquitaine while it waits for a transport delivering materials to repair its disabled engines so it can jump out. If you fail to defend the transport itself, Command will send a panicked message about the transport being destroyed...and a few minutes later, the Aquitaine's engines will magically repair themselves anyway.
To be fair, it is heavily implied that the Alliance let Bosch succeed for as long as he did because they knew about and wanted him to complete the ETAK project, so they could steal it for themselves. This meant that the GTVA likely could have stopped Bosch and his killing of countless Vasudans earlier, but kept the war going so Bosch could finish the project. Had they stopped him as soon as they could have, it is unlikely they could have finished the project, given that it was a cancelled attempt at creating a communication device to contact the Shivans (which appears very hard to do) and that Bosch took extraordinary measures to destroy the project's notes.
Memetic Badass: Due to the friendly AI's general incompetence and the ridiculously high number of kills you score throughout the game, the player's character, only ever referred to as "Alpha 1", has become this.
Only The Author Can Save Them Now: Towards the end of the second game when the Shivans start to take the war seriously. It ends in a Deus Ex Machina that was probably meant to be explained in the third game ( the Shivans blow up Capella's star as the humans retreat and then most of them warp out to an unknown destination.). To be fair, the GTVA was about to seal the last remaining jump node out of the Capella system leading to GTVA territory, with pretty much the exact same method and means you'd just successfully used the mission before (which was based on the finale mission of the first game, too). Still, everyone knows it's just a temporary measure to buy time, time that can be used to get stronger, more prepared, and more advanced. Given how far the GTVA advanced in the 32 years between the first and second games (especially after having to recover from the loss of Vasuda Prime and loss of all contact with Earth, and far more destroyed colonies), it's not unreasonable for the GTVA to be capable of standing against the Shivans in another several decades. Not outmatch them, but capable of actually holding their own this time.