These are what we call the 'YMMV items.' Things that some people find in this work. We call them 'your mileage might vary' because not everyone sees these things in the same way. This starts discussions in the trope lists, a thing we don't want. Please use the discussion page if you'd like to discuss any of these items.
YMMV: Mega Man Megamix
Alternate Character Interpretation: Blues is a flat-out jerk at times. He has no problem manipulating Bass into attacking an injured Rock or threatening to shoot Kalinka Cossack. Even worse is the time he set Copy-Mega Man up to commit suicide.
Big Lipped Alligator Moment: The Soccer and most of the one-page strips compared to the main plot. Of course, it turns out that some of the comedic elements there, like Auto's tendency towards mad science and Duo's Knight Templar status are traits they have in the main story and effectively foreshadowing. When Duo shows up in Gigamix, it is definitely not played for laughs. The antics of the part-timers are also a subversion, as they act that way even in serious storylines.
Ensemble Darkhorse: Meta example. Ariga seems to have a thing for Shadow Man, Shade Man, Dr. Cossack and Kalinka.
Growing the Beard: Gigamix features a more refined art style and plot, even more so than its predecessors. It also sees an entire arc of humor in Battle & Chase.
Duo in the Bonus Strips from Megamix is an absurdly strict, hypercritical, hair-triggered Knight Templar. This is played for laughs. Come the 'White Giant' in Gigamix Vol. 2. He's an absurdly strict, hypercritical, hair-triggered Knight Templar...who utterly decimates Wily's forces almost down to the last bot, and was willing to destroy all the Light Bots too just for being in the way. This is not played for laughs.
The interviews found towards the backs of the Megamix Udon Double Subvert this with Mega Man Legends; it shines some light on why its infamous third installment was cancelled. When Ariga and Inafune are discussing the series, Inafune says that Legends was the Oddball in the Series, and was unique in that it was the only seriesnote At the time; Starforce and ZX unfortunately may be up there too that put Capcom "in the red". He says that Capcom did not recoup its development costs. In the end, it's played straight, as Inafune says that he hopes one day the time will come where he can revive it.
Ho Yay: In addition to the Roll/Kalinka Les Yay, one of the short comics shows Toadman (a Cossackbot) hibernating with Snakeman (a Wilybot). In character profiles from one of the games, there were some implications that Snakeman was Toadman's Stalker with a Crush, so this may be another case of Shown Their Work. There's also a scene in Battle and Chase that may be a little more than just Sempai Kohai: the other characters find the whole thing very awkward...
Les Yay: Kalinka and Roll. In the story where they battle Skull Man, they have to huddle together to avoid Kalinka freezing, with Roll nearly overheating herself in order to save her life.
Blues seems to have gone over this when he threatens to shoot Kalinka Cossack. It turns out it's a Batman Gambit to prevent Rock from dying, and probably the Cossackbots caught in the crossfire too, and Shadowman assassinating Rock. It only worked because they thought he'd really do it. Everyone is saved, except for Copy Mega-Man.
In Shadow Man's opinion, Blues' actions during The Greatest Enemy In History were far over the line. After Shadow Man, whose main trait until this point was loyalty to Dr. Wily's orders (he is a Ninja, after all), went against his orders to use the confusion of Roll telling both Mega-Men to stop fighting to rescue Copy Mega-Man and give him a fairly heartwarming talk about how he could become his own person with his own life, realizing that the whole thing was a Shoot the Shaggy Dog because Blues had set him up to commit suicide via Heroic Sacrifice was unforgivable.
In the third chapter, Metal Heart, Wily uses a toy robot as the brain of his new Yellow Devil, and it quickly goes on a rampage. Turns out it only wants to reach its mother, the computer that ran the factory it was originally created in. Just when it seems its going to achieve that goal, Shadow Man tosses a shuriken through it. And then it turns into a Crowning Moment of Heartwarming.
Skull Man, both when it's revealed that the cause for his rampage is due to being sealed away and not being treated like a person like his brothers, and then again when he dies, surrounded by and finally accepted by his family.