I always thought is was rather sweet how the Commander would keep tripping over his own tongue when he tried to talked to Altaira. He can handle a giant invisible alien monster without losing his composure no problem. But talking to a pretty girl! RUN AWAY!
Adams and Jerry's moment of reconciliation, Jerry even goes out of his way to reassure his commander that there's no hard feelings.
Jerry: It's okay sir, she chose the right guy.
Makes the scene where they fight the Id monster all the more Tear Jerking.