Awesome Music: "That's The Way We Go." An awesome track for an awesome chase scene with pirates.
Critical Research Failure: Velma claims that the USS Cyclops has been missing for more than 100 years. When this film was released (2006), it had been missing for only 88 years.
Hilarious in Hindsight: At the end when Fred's parents decide to go on a trip to the Himalayas next year, Shaggy protests, saying he wouldn't want an encounter with the Abominable Snowman. That's just what happens in the next movie Chill Out, Scooby-Doo!.