Season 1
- Secret Origins
- In Blackest Night
- The Enemy Below
- Injustice for All
- Paradise Lost
- War World
- The Brave and the Bold
- Fury
- Legends
- A Knight of Shadows
- Metamorphosis
- The Savage Time
Season 2
- Twilight (Of The Gods)
- Tabula Rasa
- Only a Dream
- Maid of Honor
- Hearts and Minds
- A Better World
- Eclipsed
- The Terror Beyond
- Secret Society
- Hereafter
- Wild Cards
- Comfort and Joy
- Starcrossed
Justice League Unlimited Season 1
- Initiation
- For the Man Who Has Everything (Originally a one shot comic)
- Kids' Stuff
- Hawk and Dove
- This Little Piggy
- Fearful Symmetry (a.k.a. Galatea)
- The Greatest Story Never Told
- The Return
- Ultimatum
- Dark Heart
- Wake the Dead
- The Once and Future Thing, Part 1: Weird Western Tales
- The Once and Future Thing, Part 2: Time, Warped
Justice League Unlimited Season 2
- The Cat and the Canary
- The Ties That Bind (a.k.a. Miracles Happen)
- The Doomsday Sanction
- Task Force X
- The Balance
- Double Date
- Clash
- Hunter's Moon (a.k.a. Mystery in Space)
- Question Authority
- Flashpoint
- Panic in the Sky
- We Fall Divided We Fall
- Epilogue
