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I remember this as well. I tried to find it but couldn't. To narrow it down, I believe that it is Canadian (or at least takes place in Canada), and I remember one episode where planes were being remotely hijacked, and it turned out to be the Air traffic controllers kid playing on his home computer out of boredom. Hope this helps.
I psyched at least I'm not making this up. I even called my friend that I used to watch this with back in the day and he didn't know what I was talking about, but I am from Canada, so it probably is a canadian show, and YTV is the channel it would have been on. But the wiki list of YTV shows didn't seem to have it... of course I could have skipped it, but I assume once I see the title I will remember.
Wild guess: Mighty Max?
"If it ain't broke, don't fix it. And even if it is broke, just ignore it and maybe it'll be sort of OK — like the environment."Nope! I just found it. I went through a wiki list of canadian animated shows (thanks @lampdevil), it's called "The Boy" and ran on YTV from 2004-2005. I still can't find an actual video clip of it, so I doubt I'm going to find a torrent of the whole series. If anyone has a way to watch this, do it! ...or send me your copy haha. Thanks all!
http://en.wikipedia.org/wiki/The_Boy_(TV_series)
<- wiki entry
http://sharetv.org/shows/the_boy_ca
<- a picture of it (all I can find!)

Ok I'm definitely glad I found this site, Hopefully someone can help me. I'm trying to remember the title of a show that I don't think is that old, I'm pretty sure early 2000s but it MIGHT be late 90s. I'm sorry I don't have a lot of details. It was about a boy detective, he was young and small, and he had high-tech gadgets. He had a sidekick, who was like a big classic spy type guy with blond hair. It is possible that the kid was the sidekick. It was a fairly intelligent cartoon I recall, but those are really all the details I remember. It might have been supernatural...but I might be confusing it in my head with martin mystery. Help! Edit: I think they worked for the government, if that helps.
I'm adding more to this. Its possible the blond guy was the spy and this kid hung around, but he was super smart and solved the mysteries, i can't remember if they were supernatural or not, but i think there was robots with the gadgetry. i remember there being times when he was told to do his homework. man this description is awful haha. sorry. its not jimmy neutron! 2d.
Edited by 24.222.131.123