When you find yourself trying to remember a show (or any works) that's on the tip of your tongue but just out of reach, come here - the collective brain of the TVTropes community can probably help. Post all the details you can remember (examples help). If you're looking for a trope, head over to Trope Finder. Have general questions about tropes? Visit Ask The Tropers!
I have EVERY Sci-Fi channel's Saturday Anime in a create down stairs. And While your description in rough I think your looking for "Eyes of MA Rs"
People orginally from a planet called Atlas\Antlantis. When they distryed it, the moved one planet colser to the Sun, Mars. Now the've messed that up rather good. So the Movie is the confilct of leave and mess up Earth or stay and make it work here. But they all die, She is the last, floating in space, and watches the souls travel to earth, where the monkeys take a large leap in evolution.

I saw what I'm pretty sure was a film on the Sci-Fi channel's Saturday Anime in about 1998. It looked sort of 80's style, and involved a girl with long blond hair being put into some sort of tube thing and sent out into space/waking up in some sort of tube. She may have been from the past/a destroyed planet/etc etc. There were also bald, green-skinned (though otherwise humanoid) aliens involved, whom I think may have found her.