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We can just cut it as TWAPGP misuse. As solidified by the recent TRS thread, that trope isn't just for "things the story totally missed out on", but for things the story introduced and never took advantage of. Since the story never introduced non-religious characters in the first place, this is misuse, and it can be safely cut even without having to touch the content.
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This is an example on the YMMV page
for The Handmaid's Tale, under They Wasted a Perfectly Good Plot. It was added added by drmeagher13:
While I can certainly see the TWAPGP part of having no vocally non-religious characters in a religion-dictated dystopia, parts of this example seem like they're pushing into ROCEJ territory, especially the bit about baptism and child abuse.