Die for Our Ship: Alicia suffered a lot of this when the protagonist has a crush on her, mainly from the Namnar/Hanna and Nick/Namnar fans. However, this quickly died down when she was revealed as a Lipstick Lesbian.
Fridge Logic: Where did the video surveillance of the prison breakout go?
Lola took care of that.
Lola: I hid some security tapes from a certain prison incident.
Harsher in Hindsight: After the protagonist gets lost in Eterna Forest and ends up back at the start, he discovers the Valley Windworks building again, and in his frustration orders Des to set it on fire. (Obviously, he doesn't.) Later on, during the Tournament Arc, guess how the people running the tournament decide to get rid of the first round losers? Locking them in a building and setting it on fire.