Pre-Game
- Kira and Clumsy Ninja were enlisted in training by Sensei, and the former became a True Ninja.
- Hori-Bull became a True Ninja in a way or another.
- Kira and Clumsy developed a bond together and became close to one another.
- Kira mysteriously vanished with Hori-Bull, leaving a photo of her and Clumsy behind.
Kira's Note
Note: It is unknown if the events of the note occurred before the game started, but it's likely that they couldn't have happened after "The Town" section.Kira and Hori-Bull venture to the hills to find the Dragon Medallion, a source of great power. She manages to find it before the other ninja does, but Hori-Bull eventually finds out that she has the medallion, stealing it after hiding a jelly potion in her soup and disposing of her sword, then locking her in her cart. Kira writes an urgent note about her experience, then gives it to her friend, the squirrel, who eventually hands it over to Clumsy and his friends in the hills.
The Town (Levels 1-15)
After Kira disappeared, Sensei starts training Clumsy to become a stronger ninja and overcome his clumsiness. Kira's sister Lily also starts training to find the whereabouts of her sister. Along the way, the group comes across a chicken. She tells new details regarding the circumstances of Kira's disappearance, including that she left with Hori-Bull on purpose. Then, they discover a map with a red circle that points to the hills. Following this clue, Clumsy, Lily, Sensei, and the chicken venture away from the market to search for the hills.
The Hills (Levels 16-35)
Upon arriving at the hills, the group finds that Kira and Hori-Bull have already left, with the former's sword being found. Determined to find their friend, Clumsy and Lily continue to train, becoming more skilled the further they do so. Later, Kira's squirrel friend joins the group, and gives them the note she wrote. Upon realizing what has happened with Kira, they head to the temple with no time to waste.
The Temple (Levels 36-51)
The group arrives at the temple, but the courtyard is deserted, and the doors to the dojo are locked. While Clumsy and Lily keep on training, the chicken finds out that the temple has been guarded by ancient spells that can turn people to stone, and Sensei finds out about the Dragon Medallion's power, bringing further worry to the group. Then, Sensei discovers why Hori-Bull needed Kira: the only way the dojo's doors could be opened was with the power or two True Ninjas, which they were. With that learned, Clumsy and Lily keep training, eventually becoming True Ninjas. The doors to the dojo open, and they venture inside, only to find that Kira and Hori-Bull have been turned into stone. To break them free, the touch of an ultimate and powerful sensei is required. Clumsy and Lily complete their training, becoming Master Ninjas.
The End (Level 52)
The "true sensei" is eventually revealed to be
the player, who successfully breaks the stone. As Kira is coming to her senses, Hori-Bull knocks her out and snatches the Dragon Medallion. Clumsy, Lily, the chicken, and the squirrel work together to fight back against him. He soon loses his grip on the medallion, which is grabbed by Clumsy. Upon gaining it, his suit becomes more refined and ornate, and he is implied to have gained a large boost of power. As Clumsy and Lily prepare to continue the fight, Kira gets back up and kicks Hori-Bull, knocking his helmet off. Kira and the group are excited to have reunited with one another. Furious at his defeat, Hori-Bull leaves the temple. With the villainous ninja gone and the group in one piece again, Kira vows to earn her Master Suit and help Clumsy protect the Dragon Medallion.
