- The scene when Dorne becomes stone. Just everything about the scene is sad - him asking to lay on his own bed, and giving the little music box to the girl he loves, Millie, seconds before turning into stone...
- Poor Pericci. Her ending shows her all alone, like she was in the beginning since she couldn't stay in the future with Roddick and Millie. With just her Ocarina.
- Phia's ending, if you didn't recruit Cyuss or Ashlay. She's wandering around Mt Metorx, implying that her name hasn't been cleared, and missing Roddick quite badly too.
- When you discover Erys' body when you have both Ioshua and Mavelle in the party and Mavelle reveals that she's Erys controlling another body, and the guilt of what she did while she was Brainwashed and Crazy leaves her Driven to Suicide, and thus Ioshua finally gets reunited with his sister just to watch her die. In the remake you can keep her from doing this and instead return her to her true body if you also have Ashlay in the party.
Tear Jerker / Star Ocean