- The scene when The Kid hands Neo a gift from one of the orphans, saying he would understand. It is a spoon. Neo smiles in relief, as it means that Spoon Boy was freed from the Matrix.
- During his meeting with the Architect, the screens surrounding them show different choices Neo might make throughout the scene. When the time comes between going to the Source (saving humanity from extinction) and returning to the Matrix, there isn't a single scenario where he chooses anything other than saving Trinity's life.
Heartwarming / The Matrix Reloaded