* AttackOfTheFiftyFootWhatever: Introduction of Way Big.
* TheAlcatraz: first appearance of the prison planet Incarcecon.
* ApocalypseHow: the Omnitrix's self-destruct protocol can cause an X-4.
* [[spoiler: DisneyDeath: Gluto and Gwen near the finale.]]
* RunningGag: Tetrax, regarding his friend Gluto.
* WhatTheHellHero: Myaxx asks Tetrax if he's actually told Ben what would actually happen if the Omnitrix's self-destruct protocol wasn't shut down. When Ben learns the truth, he gets angry at Tetrax for hiding it from him.
** Gwen likewise gives one to Ben as they get further to the hideout to his suppose lack of empathy after they [[spoiler: seemingly lose Gluto]] and on if he likes being the hero sorely for the glory of it then genuinely trying to help people.
** Gwen likewise gives one to Ben as they get further to the hideout
-->'''Ben:''' I ask myself that question all the time.
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