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* As a man who has already been on the tail end of [[spoiler:a rejected marriage proposal]] what happens to Booth at the end of "The Daredevil in the Mold" is particularly jarring.

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* As Since Booth is a man who has already been on the tail end of [[spoiler:a rejected marriage proposal]] proposal,]] what happens to Booth him at the end of "The Daredevil in the Mold" is particularly jarring.
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** Cue Bones and Booth looking uncomfortably at each other, trying to figure out how to explain that [[spoiler:Sweets is dead]]

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** Cue Bones and Booth looking uncomfortably at each other, trying to figure out how to explain that [[spoiler:Sweets is dead]]dead.]]
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Crosswicking


* The entirety of "The Ghost in the Machine". It's told from the point of view from the victim - a fourteen-year-old boy. Just his age itself is sad, but when you hear what everyone has to say to him (or his skull, rather) and realize that he hears it too... Hell, Brennan even cries for him. And she '''never''' cries over victims.

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* The entirety of "The Ghost in the Machine". It's told from the point of view from the victim - a fourteen-year-old boy. Just his age itself is sad, but when you hear what everyone has to say to him (or his skull, rather) and realize that he hears it too... Hell, Brennan even cries for him. [[OOCIsSeriousBusiness And she '''never''' she]] '''[[OOCIsSeriousBusiness never]]''' [[OOCIsSeriousBusiness cries over victims.victims]].
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** When he tells Angela he wants to pursue a relationship with Jeffrey:
--> '''Hodgins''': He has [[MissingMom my mom's eyes.]]
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** Finn, Colin, Fisher, Arastoo & Wendell telling each other their memories of the day, and when they first learnt of the 9/11 attacks:

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** Finn, Colin, Fisher, Arastoo & Arastoo, and Wendell telling each other their memories of the day, and when they first learnt of the 9/11 attacks:
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** Hank revealing to Brennan that he is the reason Booth's father left the family. Hank discovered his son beating Booth and told him to leave and never come back. It is clear he doesn't understand why his own son could do that but he knew he had to protect his grandchildren. He asks Brennan to one day tell Booth and to comfort him as he's afraid Booth will hate him for driving his dad away.

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** Hank revealing to Brennan that he is the reason Booth's father left the family. Hank discovered his son beating Booth and told him to leave and never come back. It is clear he doesn't understand why his own son could do that but he knew he had to protect his grandchildren. He asks Brennan to one day tell Booth and to comfort him as he's afraid Booth will hate him for driving sending his dad away.
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** [[spoiler: Zack's]] tear-filled confession of the crimes and revealing the location of Gormogon..

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** [[spoiler: Zack's]] tear-filled confession of the crimes and revealing the location of Gormogon..Gormogon.



* Season 9's episode "The Spark in the Park". The victim's father is the physics-professor version of Dr. Brennan, extremely intelligent but with few apparent social graces. At the end, Brennan comes back to check on him, and he is writing vector calculus equations. Bones realizes and the professor explains that each one represents a different phase of his daughter's life, starting with "At rest in her crib", going through crawling, walking, somersaults, ice skating, her gymnastics career... and finally again, at rest. Bones tearfully remarks that this is "the most beautiful thing I've ever seen...more beautiful than a speech, more beautiful than a photograph"...

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* Season 9's episode "The Spark in the Park". The victim's father is the physics-professor version of Dr. Brennan, extremely intelligent but with few apparent social graces. At the end, Brennan comes back to check on him, and he is writing vector calculus equations. Bones realizes and the professor explains that each one represents a different phase of his daughter's life, starting with "At rest in her crib", going through crawling, walking, somersaults, ice skating, her gymnastics career... and finally again, at rest. Bones tearfully remarks that this is "the most beautiful thing I've ever seen... more beautiful than a speech, more beautiful than a photograph"...
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* "The Priest in the Churchyard" has a sad scene where the killer talks with her priest and ParentalSubstitute Father William. She meant well and was trying to kill PedophilePriest's while he feels heartbroken both by how she's going to jail, and because it's all for nothing (one of the men she killed might not have been guilty and the other certainly wasn't). William is also clearly saddened to realize that it was his own hostility towards one of the victims (fortunately the one who survived) due to that man replacing him, which caused the killer to trust his judgment and go after that man.

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* "The Priest in the Churchyard" has a sad scene where the killer talks with her priest and ParentalSubstitute Father William. She meant well and was trying to kill PedophilePriest's PedophilePriests while he feels heartbroken both by how she's going to jail, and because it's all for nothing (one of the men she killed might not have been guilty and the other certainly wasn't). William is also clearly saddened to realize that it was his own hostility towards one of the victims (fortunately the one who survived) due to that man replacing him, which caused the killer to trust his judgment and go after that man.

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* Brennan’s comment in “Judas On A Pole” as her dad leaves that she’s “one of those people who doesn’t get to have a family” is heartbreaking although it loses some sting when you know she does get a family later.

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* Brennan’s comment in “Judas On A Pole” as her dad leaves that she’s “one of those people who doesn’t get to have a family” is heartbreaking although it loses some sting when you know she does get receive a family later.



* The victim's father talking about his daughter (and his dead wife) in "The Girl in the Gator" and the team's guilt about how their SayingTooMuch causes him to get arrested for shooting the man who raped his daughter.

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* The victim's father talking about his daughter (and his dead wife) in "The Girl in the Gator" and the team's guilt about how their SayingTooMuch causes him to get be arrested for shooting the man who raped his daughter.



*** Brennan was identifying bodies in the wreckage of the Twin Towers, something that causes her to cry when she and Booth talk about the case when they get home.

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*** Brennan was identifying bodies in the wreckage of the Twin Towers, something that causes her to cry when she and Booth talk about the case when they get arrive home.
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* "The Graft in the Girl". Amy, the teen daughter of Booth's boss, has cancer, which it turns out was caused by a bone graft from a bone with cancer. After further investigation it turns out there are more people with cancer from the same donor (whose bones were illegally harvested). In the end the murder is solved and, but Amy is still going to die.

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* "The Graft in the Girl". Amy, the teen daughter of Booth's boss, has cancer, which it turns out was caused by a bone graft from a bone with cancer. After further investigation it turns out there are more people with cancer from the same donor (whose bones were illegally harvested). In the end the murder is solved and, solved, but Amy is still going to die.

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** A more minor part, but still worth mentioning. Booth seeks out Bones' estranged brother, who left her not long after their parents did. When she goes to call him out on it, we find out her brother [[PromotiontoParent wasn't much older than her]], and genuinely thought she would have a better childhood in foster care than if he tried to raise her

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** A more minor part, but still worth mentioning. Booth seeks out Bones' estranged brother, who left her not long after their parents did. When she goes to call him out on it, we find out her brother [[PromotiontoParent wasn't much older than her]], and genuinely thought she would have a better childhood in foster care than if he tried to raise herher.
** Booth immediately recognized the facial reconstruction drawing as Brennan's mother.



*** The FBI agent who advised against paying the Kent Twins ransom is no longer with the Bureau, mentions that he's an alcoholic now, and clearly views it as MyGreatestFailure. Really all of the initial investigators involved in that case are shown to be affected by it, and the Gravedigger remaining at large for another two seasons, [[spoiler: by which point she's killed two of them]] robs them of closure.

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*** The FBI agent who advised against paying the Kent Twins twins' ransom is no longer with the Bureau, mentions that he's an alcoholic now, and clearly views it as MyGreatestFailure. Really all of the initial investigators involved in that case are shown to be affected by it, and the Gravedigger remaining at large for another two seasons, [[spoiler: by which point she's killed two of them]] robs them of closure.



* "The Priest in the Churchyard" has a sad scene where the killer talks with her priest and ParentalSubstitute father William. She meant well and was trying to kill PedophilePriest's while he feels heartbroken both by how she's going to jail, and because it's all for nothing (one of the men she killed might not have been guilty and the other certainly wasn't). William is also clearly saddened to realize that it was his own hostility towards one of the victims (fortunately the one who survived) due to that man replacing him which caused the killer to trust his judgment and go after that man.

to:

* "The Priest in the Churchyard" has a sad scene where the killer talks with her priest and ParentalSubstitute father Father William. She meant well and was trying to kill PedophilePriest's while he feels heartbroken both by how she's going to jail, and because it's all for nothing (one of the men she killed might not have been guilty and the other certainly wasn't). William is also clearly saddened to realize that it was his own hostility towards one of the victims (fortunately the one who survived) due to that man replacing him him, which caused the killer to trust his judgment and go after that man.



** In an earlier scene, Brennan had struggled to see past the fact that the woman had murdered her daughter and was not interested in why. When she finally figured out what the mom had been trying to do, she came to see the woman in jail and apologize for judging her.



*** Plus Brennan's guilt-laden realization that everyone else in the office had a friendly relationship with Zach--even Booth. Booth has to remind her that her mentorship was even more valuable to Zach than any of that friendship, proven by the fact that he'd saved Brennan's acceptance letter.



** They're doozies too; Bones uncharacteristically starts the sharing unprompted by telling the story of the time her foster parents [[spoiler:locked her in the trunk of a car for dropping a dish.]] She's brought to tears by the memory, and keeps trying to justify it wasn't her fault
** Booth then, at a single look from Bones, tells them he would have [[spoiler:killed himself as a child had it not been for his grandfather]]
* In "The Plain in the Prodigy", Mrs. Yoder asks for the DMV picture of her son. Since the family was Amish, she probably didn't have any other picture of their son.

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** They're doozies too; Bones uncharacteristically starts the sharing unprompted by telling the story of the time her foster parents [[spoiler:locked her in the trunk of a car for dropping a dish.]] She's brought to tears by the memory, and keeps trying to justify it wasn't her fault
fault.
** Booth then, at a single look from Bones, tells them he would have [[spoiler:killed himself as a child had it not been for his grandfather]]
grandfather]].
* In "The Plain in the Prodigy", Mrs. Yoder asks for the DMV picture of her son. Since the family was Amish, she probably didn't have any other picture of their son.
** Mrs. Yoder tenderly stroking the picture after Brennan and Booth leave.



** Additionally, at one point Bones says she finds the idea of a woman burying her son "heart breaking". Booth tells her “You are the one who always says that the heart can’t break because it’s a muscle. It has to be crushed,” she replies “Well, isn’t it heart crushing?”
* In "The Bones on the Blue Line", Sweets is sitting next to a guy who just a text saying he's now cancer free. He then proceeds to tell Sweets how he's going to travel the world and sleep with exotic women, things he'd been putting off because of his cancer. Seconds later, he’s thrown into a handpole on the subway when the train derails, killing him instantly.

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** Additionally, at one point Bones says she finds the idea of a woman burying her son "heart breaking"."heartbreaking". Booth tells her “You are the one who always says that the heart can’t break because it’s a muscle. It has to be crushed,” she replies “Well, isn’t it heart crushing?”
heart-crushing?”
* In "The Bones on the Blue Line", Sweets is sitting next to a guy who just received a text saying he's now cancer free. He then proceeds to tell Sweets how he's going to travel the world and sleep with exotic women, things he'd been putting off because of his cancer. Seconds later, he’s thrown into a handpole on the subway when the train derails, killing him instantly.



* The sixth season premiere, "The Mastadon in the Room", in a good way when Hodgins and Angela are talking about [[spoiler:their baby]].

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* The sixth season premiere, "The Mastadon Mastodon in the Room", in a good way when Hodgins and Angela are talking about [[spoiler:their baby]].



* * Before that, the scene where Angela [[spoiler:gives faces to all of the slave ship victims.]]

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* * ** Before that, the scene where Angela [[spoiler:gives faces to all of the slave ship victims.]]



*** They wind up having to basically destroy the seats to get out of the elevator.



*** Colin was stealing test answers and was caught by his teacher, who came into the room crying. They both watched the news coverage together and cried together.

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*** Colin was stealing test answers and was caught by his teacher, who came into the room crying. They both watched the news coverage together and cried together.together, his theft forgotten.



** From the same episode, the description of one victim crawling over to the body if his InnocentBystander girlfriend before dying.

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** From the same episode, the description of one victim crawling over to the body if of his InnocentBystander girlfriend before dying.



** On a lesser ote, the sadness of the victim's wife.

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** On a lesser ote, note, the sadness of the victim's wife.


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** The father in question (a single dad) was so wrapped up in his work that he barely spent time with his daughter, even going so far as to ''forget'' that he'd seen her only hours before she was murdered. He only finally remembers when he's asked what he had for dinner that night--he remembered the meal she'd brought him, but not seeing her.
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* The beginning of "The Woman in Limbo". Brennan sees Angela's latest facial reconstruction of a Jane Doe and ''flips out'', repeatedly telling Angela that it's a mistake and to do the facial reconstruction again, before storming out. She then rushes to look at the evidence found with the Jane Doe, and proceeds to break down when she finds a familiar necklace. Meanwhile, both Angela and Dr. Goodman are incredibly confused by Brennan's outburst. That's when Booth comes in and sees the facial reconstruction as well, and reveals the cause of Brennan's reaction: [[spoiler:the Jane Doe is ''her mother''. She finally found out what happened to her in the worst way possible]].

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* The beginning of "The Woman in Limbo". Brennan sees Angela's latest facial reconstruction of a Jane Doe and ''flips out'', repeatedly telling Angela that it's a mistake and to do the facial reconstruction again, before storming out. She then rushes to look at the evidence found with the Jane Doe, and proceeds to break down when she finds a familiar necklace.belt buckle. Meanwhile, both Angela and Dr. Goodman are incredibly confused by Brennan's outburst. That's when Booth comes in and sees the facial reconstruction as well, and reveals the cause of Brennan's reaction: [[spoiler:the Jane Doe is ''her mother''. She finally found out what happened to her in the worst way possible]].
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* The beginning of “The Woman in Limbo”. Brennan sees Angela’s latest facial reconstruction of a Jane Doe and ''flips out'', repeatedly telling Angela that it’s a mistake and to do the facial reconstruction again, before storming out. She then rushes to look at the evidence found with the Jane Doe, and proceeds to break down when she finds a familiar necklace. Meanwhile, both Angela and Dr. Goodman are incredibly confused by Brennan’s outburst. That’s when Booth comes in and sees the facial reconstruction as well, and reveals the cause of Brennan’s reaction: [[spoiler:the Jane Doe is ''her mother''. She finally found out what happened to her in the worst way possible]].

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* The beginning of “The "The Woman in Limbo”. Limbo". Brennan sees Angela’s Angela's latest facial reconstruction of a Jane Doe and ''flips out'', repeatedly telling Angela that it’s it's a mistake and to do the facial reconstruction again, before storming out. She then rushes to look at the evidence found with the Jane Doe, and proceeds to break down when she finds a familiar necklace. Meanwhile, both Angela and Dr. Goodman are incredibly confused by Brennan’s Brennan's outburst. That’s That's when Booth comes in and sees the facial reconstruction as well, and reveals the cause of Brennan’s Brennan's reaction: [[spoiler:the Jane Doe is ''her mother''. She finally found out what happened to her in the worst way possible]].



** A more minor part, but still worth mentioning. Booth seeks out Bones's estranged brother, who left her not long after their parents did. When she goes to call him out on it, we find out her brother [[PromotiontoParent wasn't much older than her]], and genuinely thought she would have a better childhood in foster care than if he tried to raise her

to:

** A more minor part, but still worth mentioning. Booth seeks out Bones's Bones' estranged brother, who left her not long after their parents did. When she goes to call him out on it, we find out her brother [[PromotiontoParent wasn't much older than her]], and genuinely thought she would have a better childhood in foster care than if he tried to raise her
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* When Booth's father dies he thinks his grandfather is trying to pressure him to face it because he wants Booth to forgive his father. Hank finally tells Booth no, he wanted Booth's help because Hank's son died and, good or bad, Booth's dad was still Hank's child. He knows the man was horrible but he still wants to do right by him, one last time.

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* When Booth's father dies he thinks his grandfather is trying to pressure him to face it because he wants Booth to forgive his father. Hank finally tells Booth no, he wanted Booth's help because Hank's son died and, good or bad, Booth's dad was still Hank's child. He knows the man was horrible but he still wants to do right by him, one last time.time.
* The start of "The Price for the Past", where, as the features of the corpse of the week are outlined, Brennan's expression grows more and more despairing. Eventually she has Angela pull up her reconstruction and cites very specific features, the rest of the team showing great concern as they realize she already knows who it is. It's the priest who married Booth and Brennan, the chaplain from Booth's unit - another part of their past is gone forever.
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* When Cam asks Booth if he would be okay with her firing Brennan due to her attitude Booth has to admit that no, he wouldn't be okay and he would stick with Brennan over her.


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* In "The High in the Low" Wendell returns and reveals that he's been taking medical marijuna to deal with the pain of his chemo. Cam, realizing that any case he was involved in might be thrown out because of his drug use, has to instantly fire him. Wendell is polite which only makes it worse for Cam, who barely holds it together.
** Hodgins almost quits the Jeffersonian over it, stopped only because Angela stated that Wendell wouldn't want him to. But when Cam comes in he still comes in guns blazing, telling her off.
*** Cam, clearly still shaken herself, snaps at Hodgins and Angela that they can make her the villain but they need to work. Hodgins does just that, coldly and crispy informing her what he found before blowing off her thanks while Angela just stands there. They refuse to interact with Cam for the rest of the episode, leaving her very much isolated.
** Booth tries to take Cam's side, even having to tell Wendell to his face that Cam was right to fire him. While Wendell remains his polite self he points out that BOOTH was the one that told him to fight his cancer and Booth is left stumbling over his words and feeling like crap.
*** Not helped by Brennan a few scenes later, when Booth tries to play the 'letter of the law' excuse, points out that he has broken the law MANY times, including having a child out of wedlock with her (which is still a crime in Virgina). Booth instantly ends up down.
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* [[spoiler: Hodgins manages to find evidence that could prove Zach didn't commit the lobbyist murder he confessed to and eagerly goes to show it to Cam...who proceeds to accuse him of evidence tampering. He snaps that she should just throw it out if she doesn't trust him and storms out.]]

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* [[spoiler: Hodgins manages to find evidence that could prove Zach didn't commit the lobbyist murder he confessed to and eagerly goes to show it to Cam...who proceeds to accuse him of evidence tampering. He snaps that she should just throw it out if she doesn't trust him and storms out.]]]]
* When Booth's father dies he thinks his grandfather is trying to pressure him to face it because he wants Booth to forgive his father. Hank finally tells Booth no, he wanted Booth's help because Hank's son died and, good or bad, Booth's dad was still Hank's child. He knows the man was horrible but he still wants to do right by him, one last time.
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*** Brennan was identifying bodies, something that causes her to cry when she and Booth talk about the case when they get home.

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*** Brennan was identifying bodies, bodies in the wreckage of the Twin Towers, something that causes her to cry when she and Booth talk about the case when they get home.

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