Jill Valentine. Be honest, you wanted her to be the protagonist.
Nemesis counts to a degree.
Idiot Plot: Umbrella kills the population of an entire city just so they can find out who would win in a fight between Alice and Nemesis. Even better, they cover up their nuclear strike with a story about a nuclear power plant melting down, because somebody at Umbrella apparently thinks that a catastrophic nuclear meltdown looks anything like a city-leveling explosion, and isn't going to be investigated by the U.S. government. Or that all those civilians who did evacuate the city before Cain ordered the bridge closed wouldn't have first-hand stories to tell about the zombies.
Sequelitis: The first film is recognized as a decent action-thriller that, while different from the games, is still entertainingly watchable and doesn't go out of its way to step on the games' canon. This, however, marks Alice's turn into God-Mode Sue, aggressive alteration of the source material's plot and characters to the point that both make even less sense in the film's context, and an overall step down in quality.