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- In Samurai Deeper Kyo, Hanzo is featured, however, it turns out this "Hanzo" is the actual Tokugawa Ieyasu, who's also good with ninjutsu and guises himself as Hanzo, while having one fat lard to act like Ieyasu.
- In Naruto, Hanzo was the leader of the Rain Village and is a hyper-paranoid bastard, orchestrating Pain's Start of Darkness, and subsequently getting himself killed by Pain.
- Hanzo's descendents are clanhead figures in Basilisk. The main Hanzo (Hanzo the first aka Masanari) badassness is informed, but he is the one who implements the whole Koga/Iga truce. His son/succesor Hanzo the Fourth aka Masahiro and his nephew and adoptive son Kyouhachirou also appear: Masanari does his best to monitor the Kogas and the Igas as the truce is broken and by the end he's one of the few survivors in this particularly cruel Kill 'em All series, while Kyouhachirou can more than keep pace with the dueling ninjas enough to bring back reports without a scratch and lives to tell as well.
- Also in Hunter × Hunter there's a ninja named Hanzo who was looking for the Hunter license to find a scroll.
- Genderswapped into a Ninja Maid in Hyakka Ryouran Samurai Girls
- Hattori Junko from Demon King Daimao comes from a ninja family.
- A ninja named Hattori Hanzo appears in the Oda Nobunaga Tournament arc in Yaiba as a secondary character. He looks like the traditional ninja and is one of the 8 strongest.
- Another gender flip occurs in Sengoku Otome, where Hanzo is a Nerd Glasses-wearing ninja who assists Ieyasu from the shadows, though sometimes going overboard (i.e. burning down the stage).
- Hanzo is just one of the many historical figures appearing in Billy Bat.
- Hanzou from A Certain Magical Index is heavily implied to come from a prestigious Ninja family by Kuruwa (a female Ninja).
- Hanzo serves as Ieyasu's right-hand man aside of Oukatsu in Brave 10. He disappears after Oukatsu perished, but it's later revealed that he had his own agenda of ruling Japan from the shadows, effectively making him the primary Big Bad, when Ieyasu is so far shown as ineffectual. He has his own band of dark ninjas, one of them, a Russian busty blonde ninja Anastasia, already sent to the Braves to spy on them, and mostly to drive his main target Isanami into despair so he could claim her power of darkness... which (un)fortunately kills him outright when he attempts to control. In the manga, he survived, but got turned into a popsicle by Anastasia for his manipulation. He returns in the sequel and seemingly joined Yukimura, but everyone is rightfully suspicious on him.
- Hanzo also appears in The Ambition of Oda Nobuna, once again being Ieyasu's ninja. Funny thing, he's voiced by the same guy who voiced Hanzo in Brave 10
- Of special note about this Hanzo, though, is that he's one of very few named characters that is male, which is especially notable as every other named daimyo or daimyo underling in the series is either female or a villain with the exception of him, "Hideyoshi", and Saito Dosan. This actually makes the situation during the retreat when he and Zenki attack Yoshiharu more tense than it normally would be since up to that point...well, those three are a good half the male cast on their own in a Cast Herd of close to 2 dozen.
- Hanzo (or at least, a descendant who bears his name) appears as a recurring ally to the Cures in Futari Wa Pretty Cure Dragon. He is also an unapologetic Star Wars fan and demonstrated a working model of a lightsaber on a variety show in one episode. In official artwork by the author, he's deliberately drawn to look like Sonny Chiba (who has played Hanzo in a few films), and it's stated in-universe that Hanzo starred in Bodyguard Kiba in the role of, guess who, Sonny Chiba.
Films — Live-Action
- Kill Bill: "Is that a Hattori Hanzo sword?" He lives in Okinawa and makes badass katanas. Remember: You Don't Sell A Hattori Hanzo Sword. It is. Just ask O-ren. Oh wait...
- A Japanese TV series called Kage no Gundan, localized to Shadow Warriors, features several Hattori Hanzos, each descended from a previous one, and all played by Sonny Chiba. This is mostly important to Americans because Kill Bill features Chiba reprising his role as yet another Hanzo descendant: This one is a swordsmith that can make swords that can cut down Gods; he runs a sushi bar in Okinawa as a cover, but once The Bride finds and confronts him upon one of his disciples (Bill), he comes out of retirement and forges her a sword.
- At the end of the 2010 Christmas episode of Leverage, Eliot gets a Hanzo Sword as a present from Nate and Sophie.
- Hattori Hanzo is a character in Samurai Shodown, as a Badass Grandpa ninja. Said game also features Yagyu Jubei as his friend.
- He also appears in Warrior's Rage. But it's actually one of his sons, believed to be Shinzou (the boy who was used as Amakusa's Soul Jar in the first two games).
- And previously, there's also Hattori Hanzo from World Heroes as a young ninja with Anime Hair who just wants to be the best fighter ever.
- Hattori Hanzo is also a character in Samurai Warriors naturally serving under Ieyasu (and whichever faction Ieyasu happens to be serving at the time). He's portrayed as a stereotypical ninja, dressed all in black (or at least dark blue) and armed with various ninja tools and techniques like smoke bombs, shuriken and duplication techniques. He also plays the role of Foil for the other three ninjas in the game: Genki Girl Kunoichi teases him and tries to get him to lighten up, the motherly Nene wonders if he really needs to be so serious all the time, and Blood Knight Fuuma Kotaro doesn't understand why he wants to help Ieyasu forge peace and order when the chaos of wartime is so much fun. He also occasionally displays traits of a Deadpan Snarker, but more often is the Comically Serious, even when compared to the already serious Honda Tadakatsu.
- Consistently, he's been portrayed through voice via Takaya Kuroda. In later games, in nod to his actual role as a general he wears more heavy armor and becomes somewhat less-ninja-like in his designs.
- Hanzo appears as an elite officer for the Tokugawa in Sengoku Basara 3. He's also acquirable as a bodyguard to spot hidden enemies.
- Hanzo is the final boss in Alex Kidd in Shinobi World.
- In Suikoden, the leader of the Rokakku village (where Kasumi resides) is named "Hanzo".
- Kenji/Mukuro from Red Earth is based on Hanzo.
- In Mortal Kombat, Scorpion's real name is Hanzo Hasashi.
- Interestingly enough, in the non-canon webseries Mortal Kombat Legacy, his (previously unnamed son) is known by the name Jubei.
- Total War: Shogun 2 features clan Hattori (formerly a special edition bonus, now available as DLC) a great clan whose hat is Stealth- most of their units have 'Iga-ryu Ninjitsu,' allowing them to temporarily become hidden in the open, or harder to detect when otherwise hidden; they also have improved success chance for Ninja agent actions.
- Saizo Hattori from Power Instinct is a subversion, since his first name comes from Saizou Kirigakure.
- In Inindo: Way of the Ninja, he appears as one of the more powerful recruitable characters.
- Hanzo appears as a warlord in Pokémon Conquest, serving under Nene of the ninja-themed Viperia kingdom. He specializes in ghost types, with Spiritomb as his starter and the Gengar line as his perfect link.
- Hanzo's clan is a playable faction in Shogun: Total War via DLC.
- Hanzou the ninja is a playable character in Shining Force.
- In the Senran Kagura series, the ninja school that the main protagonists attend is named after Hanzo. Hanzo also happens to be still alive in the 21st century, but it might simply be a case of Named After Someone Famous. Additionally, the lead character, Asuka, is his granddaughter, but since she starts off nowhere near as talented as he was, she feels somewhat overwhelmed by his legacy. Nevertheless, she greatly wants to prove herself worthy of the family name and trains hard to attain that goal. Hanzo himself appears occasionally, and although he sometimes expresses minor disappointment at Asuka's progress, he loves her all the same and encourages her when he can.
- In the Assassin's Creed series, Hattori Hanzō was an Assassin.