Keep Circulating the Tapes: Even though Thomas has reposted most of his fanfics, Attack of the Sphinx and The Titans Strike Back are still missing.
Old Shame: One of the last things Thomas said on his old Fanfiction.Net account was that he wouldn't repost the first four stories of the series, and that his new stories won't be like his old stories.
Missing Episode: According to the author's profile, and mentioned a certain points in his fanfics, Thomas Brown was going to write fanfic titled The Prayer Warriors: Kingdom Under Shadow. It was going to be a Star Wars fanfic, but so far the author has not publish anything under this name.
Noah wrote a parody of the series titled The Player Worriers: God Is Dead & Jesus Is a Brat. He has since deleted it.
Noah also broke into Thomas' account and posted a bonus chapter to The Evil Gods II. It was deleted pretty fast, but Arcadiarika managed to salvage it and posted it to her liveblog.
Recycled Script: The Titans Strike Back seemed to be going in the same direction as Battle with the Witches, with Hogwarts re-established, and Michael and his Christians planning on doing The Infiltration again.
Thomas and Ebony have often admitted to being Trolls on their Fanfiction.Net and DeviantArt accounts, only to retract their statements and blame the fake(?) confessions on hackers.
After his de-conversion, Noah has posted several Troll Fics that satirize the Prayer Warriors series. They were usually deleted in a day or two, unfortunately.
The most epic trolling occurred in early 2013 when Ebony claimed on her Fanfiction.Net account that Thomas had died. Indeed, it seemed likely, as Thomas had stopped writing fics and even stopped tweeting. But then in late 2014, Thomas made a new Fanfiction.Net account and reposted his first four fanfics. He also started tweeting again in 2015.