- Vatican-style: The seat of the High Priest, The Pope, or the head of The Church by any other name.
- Jerusalem-style: A city historically important to religion but not directly under its influence.
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Anime and Manga
- The Hometree in Avatar serves as both a city and a sacred site for the Na'vi, though not as sacred as the Tree of Souls (which, on the other hand, isn't really a city).
- Foundation: Terminus is the holy planet of the Religion of Science.
- Rhuidean from The Wheel of Time series is a Jerusalem-style holy city for the Aiel.
- Cantisca for the Sole and Unified Church in the Arcia Chronicles.
- Agaris for the Esperatian Church in Reflections of Eterna until it is razed and burned to the ground.
- On Gor the one holy place is the Sardar Mountains, where the Priest-Kings live. Four times a year, at the solstices and equinoxes, there is a fair at the base of the mountain. Every Gorean is expected to attend the fair at least once before their 25th birthday.
- In Catherynne M. Valente's In The Night Garden, the city of Al-a-Nur is a Holy City where stand twelve Towers, each a temple for a completely different faith, from the Tower of Sun and Moon, to the Tower of Patricides, to the Tower of St. Sigrid, etc. In Al-a-Nur, all the different devotees live together in harmony.
- The Citadel of Kom, capital of the Theocracy of Omnia and centre of the Church of Om in the Discworld novel Small Gods is a Vatican-style holy city. (It's also in the Discworld version of the Middle East, about where Jerusalem would be...)
- The middle third of A Wolf In The Soul takes place in Jerusalem. The protagonist moves there deliberately under the belief/hope that it will help him fight off his lycanthropy.
Live Action TV
- Stargate SG-1 has Celestis, a holy city populated entirely by the Priors of the Ori, and located on a vast, flat plain of very shallow water. The Ori themselves manifest a sacred eternal fire there that they use to communicate with the Doci, their head priest.
- A ton of them in Eberron.
- Flamekeep in Thrane for the Church of the Silver Flame, both a Jerusalem and Vatican style, as it hosts the Silver Flame itself and the Speaker of the Flame and High Cardinals.
- Ashtakala in the Demon Wastes, an evil version, for the Rhakshasas and the Lords of Dust. A Jerusalem-style (Former capital of their empire).
- Greenheart in the Eldeen Reaches for the Wardens of the Woods, a Vatican-style (home of the Great Druid Oalian).
- Shae Mordai in Aerenal, the City of the Dead hosts the Undying Court the elves worship. A Vatican-style.
- Most of the cities of Adar are also temples of various monk orders.
- Athur in Karrnath is a Vatican-style. It houses the Crimson Monastery of the Blood of Vol. The religion's true figurehead, Vol, lives somewhere else. The monastery is home to the cardinals who spread her teachings.
- In Warhammer 40,000, Holy Terra, besides serving as capital for the Imperium, is also the seat for the Imperial Cult and Ecclesiarchy. There's literally a galaxy's worth of other holy worlds, of course, including Cardinal Worlds ruled directly by the Ecclesiarchy, and Shrine Worlds dedicated to an Imperial Saint. And in a weird example, the Imperial fortress-planet of Cadia is a holy site to the heretical Word Bearers legion, since it's where their primarch converted to worship the Chaos Gods before the Horus Heresy.
- In Forgotten Realms many people consider cities visited during Time of Troubles by deities they venerate to be especially blessed, worthy of pilgrimage or something like this.
- Albidion (Vatican-style), or rather the humongous cathedral-city at its center, in Anima: Beyond Fantasy. Arkángel, the capital of the Holy Empire of Abel, could count too (rather as Jerusalem-style).
- Civilization IV introduced religions to the series, and when you found a religion by researching the requisite technology, one of your cities will become its holy city. Not only will a holy city help spread the religion further, but a Great Prophet can build a religious wonder in it that brings in extra income based on how widespread the religion is. Capturing holy cities can thus be very lucrative even if you don't share the religion in question... and if you burn a holy city to the ground, you can expect severe diplomatic consequences.
- In the Dragon Age series:
- Val Royeaux is the capital of the Chantry of Andraste.
- Ditto Minrathous for the Imperial Chantry.
- Denerim, the birthplace of Andraste, is also this, albeit Jerusalem-style. Though a few other cities claim they're the birthplace of Andraste as well.
- Dragon Quest VIII features several important religious locales home to the Templars, but none are more important than the Holy Isle of Neos. The city and its population are systematically wiped out when Rhapthorne finally escapes from his sceptre and levels the once-sacred place to serve as his stronghold, the Dark Citadel. Neos has some good equipment, so you might want to avoid the plot for a bit.
- Sienne in Fire Emblem: Radiant Dawn, home of the Tower of Guidance, Mainal Cathedral, and the Holy Apostle, Empress of Begnion.
- St. Heim Papal State for the Church of Granas in Grandia II.
- High Charity, a colossal, mobile planetoid that serves as the capital of the Covenant and the Prophets' Holy City in the Halo series.
- At the time of The Elder Scrolls III: Morrowind, the eponymous province has three Holy Cities, one for each of the three Tribunal gods. Almalexia and Vivec are clear Vatican-style cities, as they not only house the deities they're named after but also high-ranking Temple officials (the head of the Temple in Vvardenfell in Vivec and the head of the Temple on the mainland in Almalexia). Sotha Sil... is a bit more complex, as the inhabiting god stays away from mortal affairs, and the city's location is unknown to mortals (and, as such, has no mortal inhabitants).
- Daath, where the Order of Lorelei is based in Tales of the Abyss is a Vatican-style Holy City. "The Watchers' Home", Yulia City, is something of a hybrid of the Vatican-style and Jerusalem-style, being linked with the Order and historically significant to it, though only high-ranking members and residents of the city even know of its existence.
- Luxerion in Lightning Returns: Final Fantasy XIII is the capital of Nova Chrysalia and the headquarters of the Order of Salvation.
- Mullonde in Final Fantasy Tactics is where the Church of Glabados is based out of. It wasn't always an island; the Cataclysm Backstory tells us that a powerful earthquake destroyed much of the original Mullonde region after St. Ajora Glabados was executed by the Holy Ydoran Empire.
- Yet another Vatican-style location is the city-state of Nirvath in Vandal Hearts II, particularly its greatest landmark Nigran Cathedral. It's also the location of the final battle, and it collapses after defeating the last boss.
- The titular and perhaps mythological Suihira, where the last lake on earth is said to be.
- Jerusalem is probably the Ur-Example. It's the Holy City of three world religions (in chronological order): Judaism, Christianity, and Islam.
- For the Catholic Church, Vatican City and, by extension, the whole of Rome.
- Some popes and cardinals did try to change Avignon, France, into an alternative Holy City to Rome in the 14th century.
- Mecca and Medina for Islam. See also the list of holy sites in Islam on The Other Wiki.
- Constantinople, AKA Istanbul, has some aspects of this for the Eastern Orthodox Churchesnote .
- Alexandria, seat of the Coptic Pope (who lives in Cairo these days, but who's counting?).
- Salt Lake City is this for the Latter-Day Saints.
- Kyoto is not only the seat of Shinto, but also a revered historical city for more secular Japanese.
- To a lesser extent, Canterbury in England. It was a very common destination for pilgrimages on account of its beautiful cathedral and it being the site of the martyrdom of St. Thomas Becket.
- Not lesser; in the context of Christianity in England. Canterbury is a major pilgrimage site today and is the heart of the Anglican church. Also the seat of the Archbishop of Canterbury, although he lives in Lambeth Palace in London.
- Echmiadzin for the Armenian church.
- The Russian Orthodox Church is led out of Sergiev Posad.
- In addition to Jerusalem, Hebron, Safed and Tiberias are holy cities in Judaism.
- There used to be a Muslim proverb, "The holier the city, the wickeder its people." While that is probably not true, the contrast makes it noticeable, and anyway it is likely easier to fleece pilgrims, whose only qualification is having money to travel, than it is to fleece merchants who have been at the game long enough to know all the tricks.
- Serbs have been known to refer to Kosovo as their equivalent to Jerusalem, which would make it a holy province.
- New Norcia is Australia's holy city.