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troperville

After going through trial separation due to everything she put up with, Mary Jane finally agrees to get back together with Spidey, with both of them promising to do better this time around... then One More Day happened...
- It should be noted that Stan Lee has never put the characters through any of that angsty garbage, and they remain Happily Married in the newspaper strip continuity, as well as in the MC2 continuity.
The Kid Who Collected Spider-Man was an short back-up story in an otherwise forgettable issue. Spidey reads a newspaper article about a kid who idolizes him and wants to meet him. Spidey goes to visit the kid. They talk, the kid shows him his (very impressive) Spider-Man memorabilia collection. The kid also asks him "how does Peter Parker get all those great pictures of you?" which Spidey kind of dodges (since he is Peter Parker), and pesters him to tell him his secret identity, which he refuses to reveal. Spidey then starts to leave... turns back... and explains that Peter Parker gets those great photos of him because... he is Peter Parker. And then takes off his mask. Spidey then leaves, and we see him standing on a wall in front of the building the kid was in, and a sign reveals it's a hospital. Spidey is unmasked, and the "camera" pulls in, and he's crying. And we see the rest of the newspaper article. The reporter writes that he really hopes Spider-Man sees the article, because the kid has leukemia, and his doctors say he has only a few weeks to live.
After the whole fiasco with the clones, and the return of the Green Goblin, and the loss of his unborn child, Spidey is finally getting back to his roots. As he patrols the city, he stops to harass J. Jonah Jameson one more time. But when he sees Jameson alone at his desk, hours after his employees have gone, still working late into the night, Spidey decides not to play his usual pranks. Instead, he taps on the window, eliciting an angry tirade from Jonah. Spidey then calmly says, "Jonah, it's late. Go home."
The Watcher is usually The Stoic, but this Christmas issue of Spider-Man... it's just so sweet, it made me cry! Here's the link: Small Miracles.
Issue #591 had the Fantastic Four regain their memories of Spider-Man's identity from before the One More Day Reset Button caused everyone to forget who Spider-Man is under the mask. You can see it here◊, complete with a nice bit of foreshadowing towards Spidey joining the FF after Johnny's death.
The final scene of Spider Island. After working together to save the world, Peter and Mary Jane take a moment to watch over the city.
Peter: Look at 'em, MJ. A whole city. And they all walked a mile in my shoes.
MJ: No. Just the wall-crawling parts. Everything that really matters is still right here, tiger.
From the Spider-Man: Fever miniseries, there's a sweet moment at the end where Spidey notices that he and Doctor Strange make similar hand gestures. Heartwarming in a corny way.
Nice small one. In Venom #18 (2012), Flash-Venom has to rescue Betty from falling to her doom, in a situation more than a little similiar to the famous Gwem Stacy one. They instantly do so, instinctively telling her to go limp and everything. It's obvious this is because the symbiote picked up on Peter's constant replaying of that moment while he wore it.
In the Big Time arc, May has used her new poltitical connections to get Peter his dream job at Horizon Labs. As Peter walks towards the door, a panel from Amazing #1 appears (where the recently-widowed May tells him to continue his studies so he could become a scientist). She then looks towards the sky and says, "He did it, Ben."