Proof that the remaining 10% is worth dying for here. These are recommendations made by Tropers for Manga/Pokemon Special fanfics, all of which have to be signed to stay on the page. Feel free to add a fanfic of your own to the list, but remember to use the template found here.
General FicsStories focused on the family and the friendly relationships of the cast. Plot-focused stories or light day-in-the-life stories. Pretty much anything that isn't focused on romance. Yowl of Time's Pokémon Adventures Saga:
Shipping FicsStories focused on the romantic relationships between the cast. Maps I Must Keep by ibuberu
CrossoversStories that blend one universe with another Crisis on Two PokéWorlds by PokeRescue18