All the Other Reindeer: Naruto and Sakura when they were in Konoha, Gaara when he was still in Suna, Rock Lee for being unable to mold chakra and Tenten later on for being a foreign-born Konoha nin. As a result, Ten-Ten is trying desperately to fit in.
Amazon Chaser: Despite the fact that he beat her, Neji thinks this of Tenten.
Big Fancy House: Jiraiya's "hermitage" is significantly more extravagent than the name implies.
Bittersweet Ending: To the Invasion arc. The Kinen/Hakumei rebellion might have been able to defeat Danzou and his allies had things gone according to plan... but the addition of the Sand/Sound Invasion on the same day turned the whole thing into a Mêlée à Trois, and the extra enemies combined with some mistaken assumptions about Danzou's own plans mean that the best the heroes can do is retreat before they're wiped out. At the same time, it is noted that Konoha's reputation has taken a massive hit with Hakumei revealing their identities, the village has itself taken significant losses due to the three-way battle, and the invasion has shown that Konoha can be attacked, and has permanently destroyed the village's image of military superiority. This combined with the defection of Jiraiya and Tsunade leaves the village much worse off than it was at the beginning of the invasion.
Blood Knight: Zabuza, Sasuke, Sakura and Neji all love hurting things. Zabuza and Sakura especially.
Body Double: During the Chuunin Exams, Danzou has Uchiha Fugaku pose as him. Fugaku does not survive the experience.
Brainwashed and Crazy: Orochimaru. Also, this is what Tsume thinks is going on when the "kidnapped children" reappear.
Brutal Honesty: Sai, as usual. He never loses it but eventually learns when to be quiet.
Cain and Abel: Expected for Uchiha brothers, averted for Itachi and Sasuke. Their father is somewhat disturbed that Itachi didn't try to kill his younger brother at birth. Dysfunction Junction, much?
Also averted for the Hyuuga sisters and their cousin.
Cast Speciation: Hinata's Tenshi Byakugan serves to give her a different powerset than Neji's, rather than the canonical situation where their abilities are basically the same but he's better at using them. Also, the three medics- aside from all having completely different fighting styles- end up with different medical specialties; for example, Haku focuses on medical herbs rather than using chakra to heal.
Cloud Cuckoolander/Cute and Psycho: Gaara comes across as vaguely psychotic (in the medical sense) to the others but this is only because they didn't know immediately that the monster in his head is real.
Drowning My Sorrows: After the 3rd Hokage's death, Gekkou Hayate tells Iruka that Naruto, Sasuke, Sakura, Hinata and Neji are all missing, presumed "kidnapped by the Rock nin that assassinated the Sandaime." He then silently changes his plans for the evening to "get black-out drunk."
Evil Former Friend: Technically she's been dead for 13 years but Kushina and Mikoto were once thick as thieves. Yumi invokes this by killing Inuzuka Hana to gain the Mangekyou Sharingan. Kiba sees Naruto as this.
A Friend in Need: Hakumei will gladly abandon their mission to rescue either their teammates or innocents.This is seen when Naruto is interrogated by Ibiki, who is in Kinen, luckily and when Sasuke is cornered by his mother and the Uchiha as Hakumei escapes Konoha.
Harmful to Minors: Putting aside the murder of the Third Hokage, its effect on the protagonists and their various familial troubles, Itachi once took his mother's place in assisting medic-nin in battle since she was pregnant with Sasuke at the time. Itachi was five. He still has nightmares from the experience.
Heel-Face Turn: Isaribi, Zabuza, Rock Lee, Shino, Itachi, Ten-Ten and Hiashi, though it's debatable how much of a Heel everyone but the first two actually was.
He Knows Too Much: The reason why the kids had to leave Konoha in the first place. Later on, Hakumei considers killing Shino when they realize he has put two and two together.
Heroic BSOD: Both Sasuke and Hinata in chapter 32. Hinata, because of Hiashi's death. Sasuke, because, despite him declaring a blood feud against the Uchiha clan, he still hesitated in front of his mother. Naruto helps Hinata get over it. Sasuke determines that he will never hesitate again, and that the next time he meets his family, he will destroy them.
Tsunade: My, what pretty little...(recognizes Naruto's whiskers, Gaara's eye rings, Hinata & Neji's eyes, Sakura's pink hair)...chil...dren...(flops into her seat) I NEED A DRINK. NOW. Shizune: I knew that you wouldn't want to drink in front of the children, so I've made some lemonade!
Kick the Morality Pet: As You Know, gaining the Mangekyou Sharingan means killing the person closest to you. Hana Inuzuka is pretty much the only living person in-story that Yumi is comparatively nice that isn't an Uchiha. So...
Killed Off for Real: The Third Hokage, Minato, Kushina, Hizashi, several Uchiha, Hiashi, and Hana.
Lady Macbeth: The author notes that it is rare for a Naruto fanfic to have an evil Mikoto Uchiha in it.
Let's Fight Like Gentlemen: It was highly probable that members of Hakumei would fight one another in the Chuunin Exams, but for their fight, Naruto and Haku set their own victory conditions—Taijutsu only, with a five minute time limit; whoever does the worst forfeits.
Living Emotional Crutch: Naruto, Sasuke and Hinata are this to Iruka, Itachi and Hiashi respectively, since the former's absence brings about drastic changes in the latter's lives i.e. Iruka becomes bitter and jaded, Itachi falls out of favor with his family and Hiashigives up on the world.
Mama Bear: Tsunami standing up to the goons that Gato sent after her and Inari.
The Medic: Sakura, Hinata, and Haku fill this role for Hakumei. All of them have medical skills.
Mêlée à Trois: The Kinen/Hakumei rebellion? It's on the same day as the Sound/Sand Invasion. Cue a three-way battle between the rebels, the invaders, and Danzo's forces. Things get messy fast and because no one was planning for this, no one wins. All three sides take losses, but Hakumei and the exposed members of La Résistance have to cut and run, leaving Danzou still in power.
My Master, Right or Wrong: The Inuzuka clan is loyal to Danzo simply because he's the Hokage. They're pretty decent people- they just don't question orders that seem to come from a legitimate authority.
Names to Run Away From Really Fast: Tsunade gives the kids some very badass nicknames, partly in the hopes they'll grow into them, partly to give them a treat, and largely to keep from using their surnames which are... conspicuous. Here are the characters' new full names as translated by the author:
Official Couple: Naruto and Hinata, Sasuke and Sakura. It's announced in the intro to the first chapter. In-story, Naruto, Sasuke, and Sakura remain oblivious.
Older Than They Look: Uchiha Yumi manages to fool everyone about her actual age, although most people think something is off about her.
Omake: There are short scenes at the end of most chapters, mostly for fun with loose connections to the main story (though some are referenced in the story proper) including one that has Santa Claus make an appearance; as Naruto declares, he may be the greatest ninja in the world for sneaking past the Sannin.
One-Man Army: Naruto and Gaara, for obvious reason. When Gaara sends a distress signal at the Hokage monument, it's a major Oh Crap moment.
Shown Their Work: The author has extensive knowledge of Eastern cultures and it shows. For the sake of those who don't, she points it out in the author's notes.
Spanner in the Works: Hakumei is this to the Invasion arc. While they don't win (for reasons explained in Bittersweet Ending), four out of nine of its members were seen and recognized as the children that Konoha originally went to war to save. This means that not only will it get out that Konoha utterly failed to achieve its directives but their resources didn't even get their info right. Thus Konoha's reputation takes a dive.
The Stations of the Canon: Granted, the events of the stations happen much differently, but the Wave and Chunin exam arcs take up almost the entirety of part 2. Because those events were much different, it would be damn hard to follow the stations coming next, so ultimately averted.
Stern Teacher: While she does her share of mothering them, Tsunade has high standards for Hakumei and very firmly guides them.
That Came Out Wrong: Zabuza has a moment like this when he rescues Yugito Nii during the Sound/Sand Invasion. In a twist, he doesn't say it aloud and it still comes out wrong.
This little chick was a little too sure of herself for him. He actually liked shy girls. Particularly when they were younger than him. Zabuza blinked as the thought occurred to him. Somehow...that didn't sound right...
"Well Done, Son!" Guy: Sasuke's case of this leads eventually to enough frustration he runs away. Returning as a member of Hakumei gives him an outsider's perspective that makes him wonder why he wanted the parental approval in the first place.