* ArchiveBinge: As of the extended hiatus, there are: 1993 pages in the main comic, 82 in Out of Continuity, 334 in the Lost Chapters, and 363 for the spin-off Chrono Crossover.[[note]]That's 2772 pages[[/note]] Happy reading.
** There's also 137 pages for the semi spin-off Mega Girl.
* AwesomeMoments: [[http://twoevilscientists.smackjeeves.com/comics/391321/double-trouble-pt-48/ Doppelganger is an entire army]].
* FanPreferredCouple: Blaze/Zero. About half the pages that they appear have comments that they should hook up.
* FunnyMoments: [[http://twoevilscientists.smackjeeves.com/comics/485578/back-in-black-pt-4/ Bass's method of dealing with G.U.N.]]
* GrowingTheBeard: It starts out fairly decent, but the quality starts going up after the first few arcs and never stops.
* FunnyAneurysmMoment: There was at one point a joke where Quint was going to send Roll to the "Time of ''VideoGame/MegaManLegends''." under the logic that nobody will ever hear from her again, a jab at Capcom leaving the series in limbo. Then the game was announced... Before being cancelled abruptly, making the joke uncomfortable.
* HilariousInHindsight: [[http://www.archiecomics.com/Blogs/tabid/97/EntryId/864/SONIC-and-MEGA-MAN-Comic-Crossover-Event-Announced.aspx Sonic and Mega Man comic crossover event announced]], by Archie Comics. And now, look at this [[http://www.kotaku.com.au/2012/07/sonicmega-man-crossover-wont-feature-any-humananimal-romance/ art]]. The pairs seem familiar, don't they?
** One joke in 2009 was Mega Man asking if someone got his application to be in the new ''VideoGame/SuperSmashBros''. In 2013, Mega Man was finally announced to be in the WiiU and 3DS installments.
* HoYay: Joe and Buzz, one sided.
* {{Squick}}: [[spoiler:Vanilla and Wily]] used to have a relationship, serious enough to result in a kid.
** The first of X's systems that Dr Light designed was his junk. [[http://twoevilscientists.smackjeeves.com/comics/60327/the-proper-equipment-pt-10/ he carries it around in his pocket]].

----