* TheScrappy:
** Bai, who is weak and will rob and desert you if you stay at an inn.
** Clay, while a decent fighter, annoys players with a dungeon fee even in "dungeons" with no monsters. If you refuse to pay him for any reason, he'll act rude and leave you.
* ThatOneBoss: [[FatBastard Boozoo]]. He has tons of hit points and can hit with you with RapidFireFisticuffs that can potentially hit the whole party for heavy damage. The worst part: you have to fight him twice in a row.
* TheyWastedAPerfectlyGoodPlot: Where to begin?
** Why the heck [[spoiler:Chezni is now bald and calling himself Petro, in addition to Midia and Daphne looking completely different.]]
** The hints that [[spoiler:Chezni had stolen the throne of the Potentate through a bloody coup.]]
*** These two did have something of an answer in the game. One random townsperson you meet claims to have been the king, but no one remembers him. [[spoiler:it's likely the coup wasn't bloody at all, but rather based around LaserGuidedAmnesia. Chezni's baldness may also be to hide his Raigan heritage. As his blond hair was pointed out as unusual for a Lafury at one point in the original game. The latter two still don't make sense though.]]
** Why everyone on Eltz knows about Chezni and Midia, and worships them, [[spoiler:despite them apparently trying to hide their identities.]]
** The Great Union in general.
** Granada's entire motivation.
* ValuesDissonance: The... "humor" found throughout the game. Does any game really need that many jokes revolving around "Ha! ''Women!!''"? Not to mention the number of sidequests which are resolved by the beating of either children or spouses.