* SugarWiki/AwesomeMusic: Akira Ifukube sent both Godzilla and himself out with a bang, as this was Ifukube's last film score before he retired. In an interview, Ifukube said that composing music for Godzilla's death was almost like composing music for his own death.
* CreepyAwesome: Destroyah is one the purest examples of NightmareFuel in the franchise, and the fans love him for it.
* CrowningMomentOfHeartwarming: After a TearJerker conga at the end, we see that Junior absorbed his father's radiation (saving the world in the process) and has matured into a fully grown adult as the next Godzilla. Our little prince we've seen grow up over the last few movies has taken the throne as the new king.
* EnsembleDarkhorse: Though he's the main villain, as a Kaiju overall, Destroyah has quite a large following thanks to this movie. Many saw him as an insanely dark and cruel monster that gave Godzilla one hell of a show.
* FridgeBrilliance: Remember the line "Godzilla never does destroy Japan"? Remember Junior's GentleGiant nature? Now the line has a new meaning due to the mess by the Futurians. The reason why JapanTakesOverTheWorld is maybe due to Junior being a gentle giant in the movie.
** Speaking of ''Film/GodzillaVsKingGhidorah'', that film retroactively foreshadows the end of this one: Junior is killed then later revived and mutated into an adult Godzilla by the fallout of his father's meltdown; much like how the Godzillasaurus in ''Film/GodzillaVsKingGhidorah'' was killed then later revived and mutated into Godzilla by a crashed nuclear submarine.
** Destoroyah was invulnerable to the military freezing weapons after his first OneWingedAngel transformation, but it's ultimately what does him in. Why? Because he'd just been super-heated by Godzilla's meltdown. His super-heated armor was rapidly cooled, subjecting him to thermal shock. He was probably reduced to a fragile wreck before he hit the ground, allowing the impact to finish him. This means that Godzilla ultimately gets the credit for Destoroyah's defeat, even though he didn't deliver a killing blow.
* HarsherInHindsight: In the original film, Serizawa tells Ogata to be happy with Emiko when he makes his HeroicSacrifice. In this film, she did not marry him after the events of the original and is most likely suffered from SurvivorGuilt when she felt she had no choice but to reveal the Oxygen Destroyer.
** Serizawa's fears of the Oxygen Destroyer has become a reality now that the Oxygen Destroyer has awaken and mutated Precambrian life-forms whose powers derives from the weapon that killed the first Godzilla.
* MemeticMutation: DESTOROYAH!!! In the Godzillathon review of this movie, James Rolfe always says "DESTOROYAH!" whenever he addresses him.
** He even does this in the AVGN episode "Godzilla".
* NightmareFuel: The film surprisingly has an amount of nightmare fuel in the film. These include:
** The side-effects of Godzilla melting down. The red on his face and body does not help.
** Destroroyah's unnerving appearance and his HellIsThatNoise roar. Does not help that his final form looks like "the goddamn devil".
** The fact that Destoroyah was awaken by the Oxygen Destroyer meant Serizawa's fears had came true. To the point he stripped several fish to the bone in the aquarium scene.
* TearJerker: Junior's death, and Godzilla's failed attempt to revive him. The music for this sequence is appropriately titled ''Roar of Sadness''. Also, Godzilla's death.
** Hell, even the events leading up to Godzilla Jr.'s death was a TearJerker when you really think about them. Up until the final battle, Godzilla was desperately in search of his son, following him from location to location. Godzilla apparently KNEW he was dying, and like any father on his death bed, wanted to see his son one last time. And just as they're about to embrace, [[KickTheDog Destroyah breaks up the reunion and kills Junior.]] No wonder Godzilla got so pissed and started beating Destroyah so savagely. [[DoNotGoGentle Godzilla had nothing left to lose.]]
* TheyWastedAPerfectlyGoodPlot: A scene featuring Godzilla giving Destoroyah a NoHoldsBarredBeatdown as dies was removed because it lessened the impact of Godzilla's death, though it's still pretty satisfying to watch.
** That ending was shot as a dupe and never meant to be used. Wires and filming equipment can be seen in many of the shots, betraying its hastily put together nature.