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* AlternativeCharacterInterpretation: Why ''does'' the Joker surrender at the end, even though killing [[spoiler: Sarah meant there was nobody stopping him from doing whatever he wanted to the babies? Did Sarah's HeroicSacrifice touch [[EvenEvilHasStandards even his heart?]] Did he figure her dying was enough to push Gordon and Batman over the DespairEventHorizon? [[TakeAThirdOption Maybe he just used up his last bullet on her?]]]]
* AnticlimaxBoss:
** Depending on how you view the ending, or if you were waiting for Joker's big move to either happen earlier or be larger in scope and body-count, the ending, chilling though it is, can come off thusly.
** If you were looking for a grand rematch between Batman and Bane, sorry. Their meeting is fairly civil -- but, somewhat paradoxically, still manages to be ''awesome''.
* ArchivePanic: Saying the story is big is an understatement. The story comprises every major Batman comic released in 1999, which is already just over one hundred issues. Then you add in the tie in issues in ''Azrael'', ''Catwoman'', ''Nightwing'', and ''Robin'' and a few tie-in one-shots and specials. Then there are the stories directly leading into it, "Cataclysm", "Aftershocks", and "Road to No Man's Land." And lastly there come the arcs before that, "Contagion" and "Legacy", which kickstarted the whole thing. Altogether, that's over 150 comics. The four new edition trade paperbacks DC released through 2011 and 2012, reprinting the main story alone, are over 500 pages each.
* AssPull: [[SupermanStaysOutOfGotham Superman suddenly deciding that he should stay out of the whole thing because apparently he thinks that there’s nothing he can do.]] Leaving aside that it’s incredibly [[OutOfCharacterMoment out-of-character for Superman to give up on anyone who needs rescuing, let alone leaving A WHOLE FREAKING CITY]] to suffer in ruin and devastation, there’s also the fact that with his powers, he could easily save a lot of people or evacuate a lot of people who want out of Gotham, yet decides to give up and leaves the whole thing to Batman and his allies. Yet somehow, even Batman doesn’t bother stopping him from leaving or telling him what he can do to help, despite the fact as one of the smartest superheroes on earth, Batman could probably think of a dozen ways for Superman to help him save Gotham. The whole thing reeks of DeusExitMachina and feels really contrived because it sounds like the writers were so desperate to keep any Superheroes apart from Batman and his allies out of Gotham that they just decided to have both Batman and Superman grab the IdiotBall and boot Superman out of the story with half-assed excuses and flimsy justifications. Granted, [[StoryBreakerPower this is Superman we’re talking about here]], but still...
* CompleteMonster: ComicBook/TheJoker is determined to destroy what little order the desolated Gotham City has. He abducts several police officers and disguises them as himself, resulting in many being killed by their comrades, mistaking them for the Joker. He then takes an entire hospital ward of newborn infants hostage, planning to [[WouldHurtAChild kill them all]] to destroy the city's spirit. When Commissioner Gordon's second wife, Sarah Essen, tries to stop him, he fatally [[BoomHeadshot shoots her in the head]].
* ShipToShipCombat: A case of this among the ''writers''. In the Nightwing tie-in, Chuck Dixon sowed the seeds for a Nightwing and Oracle relationship, while also making clear the antagonistic relationship between Nightwing and Huntress. In the concluding issues penned by Greg Rucka and Devin Grayson, Nightwing greatly cares about Huntress, and even kisses on New Year's Eve.
* TearJerker:
** The death of [[spoiler:Jim Gordon's wife, Sarah, at the hands of the Joker]]. Joker has a large number of infants held hostage. [[spoiler:Sarah]] rushes in with a gun, and Joker tosses one of the babies at her, forcing her to drop her gun to save it. No points for guessing what he does once she's unarmed. Gordon gets the news outside - he rants tearfully about how the Joker has gone [[ComicBook/TheKillingJoke too far]] and seriously considers killing him, but after shooting him in the knee, chooses law over anarchy and walks away. And if him weeping on the steps as Batman holds him steady doesn't get to you, then the scene of him spending the New Year alone, singing Auld Lang Syne dry-eyed over [[spoiler:Sarah]]'s grave definitely will.
** To put this event into perspective: [[EvenEvilHasStandards Even]] ''[[EvenEvilHasStandards The Joker]]'' [[EvenEvilHasStandards realizes that this wasn't funny, even by his standards]]. On the other hand, Joker found Gordon blowing off one of his kneecaps to be ''hysterical''.
--->'''Joker''': ''He shot my knee! I may never...'' ...oh... ''Like your '''daughter! I GET IT!''' Good one, Commissioner!''
** In the novelization, Batman's last scene: visiting his parents' grave and the remains of quake-ravaged Wayne Manor: "''I'm home.''"
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