[[WMG: Had the show continued into a third season, aliens would have featured in it]]
It was alluded to by Major Briggs and all the Project Bluebook references in the late 2nd season.

[[WMG: The midget was behind it all...]]
Red three-piece suit? Name not revealed? He had to be Lucifer.
The movie-Fire Walk With Me- reveals that The Man From Another Place is actually 'the arm' of Mike, the one armed man.
* Oh, you mean the arm that had "been touched by the devilish one"?

[[WMG: The Giant was an inhabitant of the White Lodge, stuck in the Black Lodge after the former was destroyed or absorbed by the latter.]]
He tries to help Cooper fight The Evil in the Woods by giving him clues.

[[WMG: Alternatively, the Giant was giving Cooper clues to lure him to the Black Lodge so that the Evil could possess him/steal his soul]]

[[WMG: Agent Cooper eventually becomes [[Series/{{Dexter}} Special Agent Frank Lundy]]]]
He escaped the Black Lodge and continued his work for the FBI. Notice Special Agent Lundy is chipper, upbeat, has precise unique methods and is obsessive about food. He even ends his time on Series/{{Dexter}} by saying he is going to work on a case in Portland, OR. Back to where he started . . .

[[WMG: The man in the red suit and plaster mask in the Black Lodge in the film is the Log Lady's husband.]]
He died in a fire, and that guy's wearing a red suit. He's also holding a stick, which could serve as the link between himself and the Log Lady's log. There are several parts in the show as well as the film that hint this could be likely.

[[WMG: Killer B.O.B. is Dale Cooper's shadow self.]]
In the episode in season two just after [[spoiler: Major Briggs is "abducted" by a strange white light just before he is about to tell Cooper about the White Lodge]] Cooper speaks with Hawk and Sheriff Truman about the White and Black Lodge. Hawk states that the White Lodge is where spirits reside. He also goes on to talk about the black lodge stating it is "the shadow-self of the White Lodge. The legend says that every spirit must pass through there on the way to perfection. There, you will meet your own shadow self. My people call it 'The Dweller on the Threshold' ... But it is said, if you confront the Black Lodge with imperfect courage, it will utterly annihilate your soul." Tying back to the "How's Annie" ending when [[spoiler: B.O.B. invades Coopers soul]] which was setting Cooper up to face his shadow self which was/is in fact [[spoiler: B.O.B]].

[[WMG: Twin Peaks is set in the [[Series/BuffyTheVampireSlayer Buffyverse]].]]
Let's see: small wholesome town with dark secrets, check. Portals to hell dimensions, check. People killing loved ones while under demonic possession, check. Prophetic dreams, check. Mystical secrets that can only be seen by the mentally ill, check. High school girls with superpowers (and in-story DawsonCasting!), check. Morally bankrupt lawyers, check. JerkAss father figures, check. So basically, Leland Palmer has at some point worked for Wolfram & Hart, BOB and Mike's convenience store was in Sunnydale, Nadine's a Slayer, and Willow really did go to the Black Lodge in "Restless".

[[WMG: This series will one day undergo a Comic Book Revival.]]

[[WMG: Several Mind Screws exist in one shared universe.]]
It all starts with HBO's Series/{{Carnivale}}. Several thousand years ago, the first avatara appeared: one an avatar of good, the other of evil. Every generation, two new avatars were born. The avatars were receiving their good/bad powers from either the white or the black lodge. Had Carnivale not been cancelled, Word of God is that it would have ended with the Trinity nuclear test, in the mid 1940s. It's also stated that Sofie is the Omega: the last of the Avatar, neither good nor evil, the one who will bring about the end. So, in the mid 40s, the avatar lines cease. The lodges, however, continue to exist.

Without avatars to project their influence through, things start getting weird. Instead of only a couple of people with ties to the powers of good and evil, now the powers seem to "leak" out into the world. This brings us to {{Twin Peaks}}. The black lodge has Killer BOB, the white lodge has (perhaps) the giant. The two lodges try to influence people in the real world using dreams. Windom Earl, a truly evil soul, is being contacted by the black lodge. The hope to use him as their pseudo-avatar. Likewise, agent Cooper is being contacted by the white lodge, who need a truly good soul to defeat evil. The show was cancelled before this could be resolved, and the series ends with Cooper trapped (perhaps forever) in the black lodge.

As {{David Lynch}} has confirmed that {{Lost Highway}} takes place in the Twin Peaks universe, and since {{Mulholland Drive}} was originally meant to be a spinoff for Audrey, it can be assumed that these two movies play by the same rules. People are influenced by the two lodges, each trying to gain a foothold in reality without the use of a proper Avatar. As Mulholland Drive is revealed [[spoiler: to be mostly a dream meant to cover up the main character's murder of her lover]], this could be either the white lodge trying to make her face what she's done, or the black lodge trying to make her forget about it and join them. Similarly, many parts of Lost Highway can be explained as visions from the lodges, the Mystery Man being a creature similar to Killer BOB, etc.

It must be remembered that time moves differently in the lodges than on our plane of reality. In the Twin Peaks prequel movie, Laura is warned about events that won't happen until the series proper. With that in mind, let's take a look at events that happened in Middlesex, Virginia. The year is 1988, and {{Donnie Darko}} is a troubled teenager who frequently sleepwalks. He also has vivid dreams. One day, a vision of Frank the rabbit tells him to leave his room. Donnie does so, and his bed is then destroyed by a mysterious falling airplane turbine. Donnie is told that he has 28 days to prevent the world from being destroyed. Clearly, the white lodge is using Frank as it's voice to help Donnie save the world. In the [[{{recut}} director's cut]], Donnie is often seen to "download" information, with close-ups of his eye and many numbers and images flashing by. The Word of God on this is that the information is coming from unseen beings from the future. In actual fact, this is the White Lodge giving Donnie info on future events which he needs to prevent. The story of Donnie Darko plays out over the course of about a month, before Donnie travels back in time and saves the world by letting the airplane turbine kill him instead of leaving his bed. The events that took place during most of the movie end up never happening. They were erased from existence. Of course, the two lodges still remember them, as they exist outside of normal time.

The earlier mentioned Lost Highway is likely a similar story to Donnie Darko, with one or more of the lodges creating increasingly disturbing alternate realities to try and aid their pseudo-avatar on earth. It's possible that [[spoiler: the events of Mulholland Drive aren't a dream meant to influence Betty into one lodge or the other, but an alternate timeline that she destroys by traveling back and committing suicide]]. It's very probably that similar events happen very frequently. Perhaps it's one of the lodges itself that creates these alternate realities in a bid to save the world, or maybe it's the trapped agents Cooper and/or Jeffries trying to get someone to rescue them. Either way, these realities can't last too long, or the world eventually ends.

What happens if one of these alternate realities is not destroyed in a fairly timely manner? {{Southland Tales}} is what happens. It's not all that obvious in the feature proper, due to half of the story being told in a tie in graphic novel (whatever idiot thought that would work should be shot), but Southland Tales can best be described as the future of Donnie Darko's tangent universe. Since Donnie sacrificed himself and closed the tangent universe, our reality was saved. However, he did not destroy the alt. universe, instead simply closing it off. Since the tangent universe can no longer effect out own, neither lodge is influencing it. This means that the white lodge isn't acting to save this world, nor it the black lodge acting to destroy or rule it.

This universe begins to fall apart, starting with the discovery of the "fluid karma" that the Treer company finds while drilling of the coast of Israel. Fluid Karma is an organic compound the circles around the earth like a serpent. It can be assumed that our primary universe also has fluid karma, but it's only reachable through one of the lodges. It's likely that fluid karma is what flowed through the old avatars' blood streams (hence why their blood was blue). With no lodge to control the Southland Tales alternate universe, fluid karma leaks out into reality. Another side-effect is "Operation Dream Theory." Here's what the Southland Tales faq page on imdb has to say about that:

"'Operation Dream Theory' was an experiment created by Treer. The Treer generators were slowing the rotation of Earth by .0000006 miles per hour, which caused strange effects around the world.
One of these was a rift created in the fourth dimension -- the fourth dimension being time itself -- at Lake Meade, which was discovered when an airplane flew through it and had all its passengers left with amnesia (bar one - Krysta Now, who gained psychic abilities from it).
Once it was discovered, they sent monkeys through it, which failed (Boxer claims that only a human soul could survive the trip). After much trial and error with monkies, Baron decided to send Boxer through it - chosen because of his political ties and his celebrity persona.
When Boxer (and Roland) traveled through the rift, it created duplicate versions of both -- one set of duplicates traveled 69 minutes back in time, while the "originals" stayed in their original time. There are now two versions of each co-existing in the same universe -- two Boxer Santaros and two Roland Taverners.
Boxer's original self was incinerated in a car bomb triggered by Serpentine, while the duplicate Boxer is still roaming. "

Reality itself is falling apart. It becomes up to the two Roland Taverners to save (or more likely, destroy and rebuild) their crumbling, neglected universe. The tattoos of various religions and beliefs that cover Boxer's body and are "fighting to see who will will" could be seen as meaning what faith the new universe will follow after the destruction of the current one. After all, the predominant force in the "real" reality has always been the two lodges, absent from this universe. The movies ends with the Jesus tattoo bleeding, Christianity is the victor, and the new reality will follow the rules of this faith.

[[WMG: The third season would have started with Cooper, Pete and Audrey having to escape from the Black Lodge.]]

At the end of season two, when Andrew Packard opens the safe deposit box, triggering the bomb placed in it, we see only his glasses flying out of the blast. The reason for this is because the elderly bank clerk is actually another incarnation of the Man from Another Place/The Giant who transported both Pete and Audrey to the Black Lodge (or the place with the red curtains, depending on the fact you believe this is actually the Black Lodge or just a buffer zone between the Black and White lodges) mere seconds before the entire building exploded. With Dale Cooper having switched places with BOB, the third season would have started with all three of them trying to get out of the Black Lodge.

[[WMG: Cooper actually hates/is apathetic to Twin Peaks.]]

At least to begin with / the pilot. The eccentricities he shows and obsession with minutiae like the names of trees and varieties of squirrels is essentially him being condescending to the locals. Either that, or he thinks that if he keeps sweet-talking the town as much as possible, he'll end up in everyone's favor, which will help his investigation. The explanation that he is whittling because "that's what you do in a town where a yellow light still means slow down instead of speed up" could easily be interpreted as sarcasm. How he feels as things get crazier is up to speculation.

[[WMG: Twin Peaks is part of The Matrix]]

The inhabitants of the Black Lodge are in fact exiled programs. Dale Cooper is an Agent assigned to track down and eliminate BOB, who, in his spare time from serving as the Trainman, terrorizes the inhabitants of Twin Peaks.

[[WMG: The events of the series was a back-up plan by [[DigimonWonderswanSeries ZeedMillenniumon]].]]

[[XanatosGambit In case his plan to conquer the omniverse was thwarted, by Ryo or ENIAC, whichever, it's not unthinkable that he'll have some way to flip off the Sovereigns and ENIAC, who were dedicated to order, peace and stability.]]

[[WMG: Phillip Jeffries is Pierre Tremond / Chalfont. ]]

I think Pierre, a.k.a. the grandson, a.k.a. the creamed corn kid, is really Phillip Jeffries. It's either an inhabiting spirit thing or Jeffries is reverted to child form in certain incarnations. (I lean towards the latter.) My supporting points:

1. Pierre's got some David Bowie hair going on, and his little black suit is very FBI.

2. The monkey, who might also be Pierre (remember the mask scene in Phillip's story), talks about Judy.

3. Phillip has been to one of their meetings. I didn't see Phillip in the meeting scene, but I did see Pierre...with his black suit and David Bowie hair. "Fell a victim," he says. Could be a self-referential comment.

[[WMG: Phillip Michael Gerard was a Dugpa.]]
Towards the end of the second season, as more is revealed about the Black Lodge, Windom Earle describes Dugpas, sorcerers would attempt entry to the Black Lodge [[IfYoureSoEvilEatThisKitten by committing evil and vile acts]]. Phillip Michael Gerard has an ambiguous relationship with MIKE, who is [[DemonicPossession possessing him]] for reasons never made very clear, and who looks like him (unlike BOB, who is often shown intercut with shots of the person he's possessing). We know that, in the Black Lodge, every visitor must be confronted by their shadow self, the Dweller On The Threshold. MIKE describes BOB as his "familiar", and mentions having cut off his arm to separate himself from the tattoo [[ArcWords "Fire Walk With Me"]]. BOB is associated with fire both metaphorically and in dialogue ("Wanna play with fire, little boy? Wanna play with BOB?"). The Man From Another Place refers to himself as "The Arm" at one point. Therefore:
* Phillip Michael Gerard committed vile acts to allow him access to the Black Lodge, where he was met with his doppelganger: MIKE.
* The "Fire Walk With Me" poem either ''is'' or merely ''describes'' the summoning incantation of BOB, conjuring him out of the Black Lodge and into the mortal world.
* MIKE possessed Phillip Michael Gerard and conjured up BOB in order to go about having their wicked fun.
* MIKE [[FaceHeelTurn "saw the face of God"]] and decided to, erm, [[LiteralMetaphor sever his ties]] with BOB and the Black Lodge, thus cutting his arm off, which became The Man From Another Place.
* BOB and The Man From Another Place still harbor the same connection on some level, which is why the latter demands his [[PerfectlyCromulentWord garmonbozia]] in ''Film/FireWalkWithMe''.
* After MIKE "saw the face of God", it would seem Phillip Michael Gerard didn't agree with his [[NamesToRunAwayFromReallyFast Dweller On The Threshhold's]] [[FaceHeelTurn new lease on life]], since he kept MIKE suppressed with anti-psychotic drugs.
** It's also possible that Phillip ''does'' agree with his new point of view and is instead [[SealedInsideAPersonShapedCan hiding MIKE's presence]] in case others from the Black Lodge come looking for him.
* Mrs. Chalfont/Mrs. Tremond/Grandmother is likewise a dugpa of the Black Lodge, and her "Grandson" is her Familiar, hence why/how he's able to snatch the cream corn(?) away.