[[quoteright:350:https://static.tvtropes.org/pmwiki/pub/images/megaman_zero_4_ending.png]]
[[caption-width-right:350:Poor ''[[TheWoobie Ciel]]...'']]
'''Warning''': Due to the heavy continuity of the series, '''all spoilers here will be unmarked'''.
!!Main series
* This dialogue. What makes it worse is that [[MartialPacifist it's X]] we're talking about.
-->'''X''': "Since you've disappeared I've been fighting this war alone against an uncountable number of Mavericks for nearly a hundred years... battle after battle... so painful and so sad... but the hardest part was when I discovered that I no longer cared about the enemies I fought..."
* The boss rematches in ''Zero 2''. Even before that, [[PunchClockVillain they were some of the less villainous members of Neo Arcadia]], defending important military sites, supply chains, nature reserves, or the Baby Elf location, rather than executing innocent reploids. In the refights, [[MindControl they're taken over by Elpizo and the Baby Elves]], and only really wake up after you beat them, leaving them wondering what is going on, and in many cases, [[HalfTheManHeUsedToBe why they are cut in half]].
* Elpizo destroying X's body. You get a CG close-up of Zero's anguished face watching helplessly as the last thing keeping his best friend alive explodes before his very eyes.
* One of the e-Reader cards you could use with the Japanese version of ''Zero 3'' or simulate in all versions of the ''Zero/ZX Legacy Collection'', adds a Cyber-elf near the Resistance Base's Command Room. Examining them, it's heavily implied to be Elpizo, regretful of his actions, having been turned into a Cyber-elf at the end of ''Zero 2'' by the Dark Elf's healing.
--> ...?
--> It has a warm light but there's a sadness to it...
--> Almost as if it remembers this base.
* The Guardians of Neo Arcadia sacrificing themselves to give Zero the opportunity to destroy Omega.
* X's final goodbye to Zero at the end of ''Zero 3''. Not only will the sad ambience of it all really tug at you, but the fact that X won't be around to see the peace he and Zero fought long and hard for is made blatantly apparent here.
--> '''X''': "Can you hear me, Zero? My energy is almost all spent. I can't... stay in this world... much longer. Zero... I want to leave this world in your care. The threat Weil represents has not left this world. I want you... to protect humans and Reploids. Ze...ro... you can do it... you... can..."
** The song, "I, 0, Your Fellow" that plays during that exchange, which really hammers the sadness of the moment home. The remix on the official album makes it even more sad.
* The battle against Crea and Prea in ''Zero 3'', especially their last words upon being defeated.
* In ''Zero 4'', if you talk to the caravan members before going on the final mission, you'll find out that they ALL want you to come back safely and do stuff with them. All those jaded humans and your fellow resistance members are finally closing the gap created by centuries of war, and all want to share their experiences with you as they finally start living in harmony together. This should be in the heartwarming section, but alas...
** There's also Alouette. Zero's last (optional) conversation with her has the girl extract a promise from Zero that the three of them (including Ciel) should someday explore Area Zero together. Oh, and if her dialogue as Prairie is taken into consideration, it might imply that she's fallen for Zero herself (seeing as she had feelings for Giro, Zero's {{Expy}}, because she herself stated that the man reminded her of Zero.
* One that's often missed in ''4'' (though understandably so, given just how bitter the BitterSweetEnding is) is that Zero is a lot more emotive in this game. There are a lot of points where the old Zero from the ''X'' series peeks through, as Zero has finally begun to understand the past. He's a lot more willing to crack wise at Mavericks this time (much to the chagrin of Popla Cocapetri and Mino Magnus), and he's a lot more outwardly supportive towards Ciel's feelings. Why is this sad? Because he's also formed certain opinions about himself that only get reinforced throughout this game - Niege stating that he and Craft are no different from [[OmnicidalManiac Dr. Weil]] so long as they continue to fight really hits him hard, even if he doesn't show it, and after being forced to put Craft down to stop him from killing everyone in Neo Arcadia, he [[HeroicBSOD actually agrees with this assessment]]. Though he later states he's only ever fought for what he believes in, there's a real sense that he's been going through what X apparently went through the last one hundred years.
* Craft successfully blasts Neo Arcadia (and the fact that Zero was unable to stop it at all). Sure, he was doing it to finally kill Dr. Weil, but the act definitely crosses the MoralEventHorizon because there were people at the area where Craft fired. ''Innocent'' people, humans just trying to survive a tyrannical government. The hopelessness of the situation was such that Craft, once a hero by Neo Arcadia's standards, broke down and committed a terrible atrocity to try and make right. And it was AllForNothing; the body Weil now has is virtually invincible, and he only suffers some minor damage from the blast, wisely deciding to play dead and lie low so that Zero could deal with his traitorous subordinate before taking the reigns again. According to [[AllThereInTheManual the manual]], this kills ''20 million people.''
* The ending of the series. After Zero's HeroicSacrifice, we see Ciel flee from her companions until she finally breaks down crying all the way through the closing credits. At the end, she tells him, wherever he is, that she'll follow his example and make the world a better place. "Just come back someday... I... I believe in you!" Cut to Zero's shattered helmet amid the wreckage of the Ragnarok satellite -- he's not coming back, folks. Absolutely brutal.
** The player sees lots of shooting stars falling as Ciel cries, but then you realize... those are actually pieces of Ragnarok. Yes, that's right, the player is watching ''Zero and remnants of Ragnarok burn up on re-entry'' as they see Ciel cries her eyes out.
** The Japan-only (prior to ''Collection'') vocal intro to the ''Zero 4'' credits theme "Promise -Next New World-" translates as follows:
-->''Always overflowing in my heart,''\\
''My feelings for you.''\\
''There is no forever,''\\
''so I want you by my side for now.''
** [[https://www.youtube.com/watch?v=WctXJTxuHj4 The english translation for Freesia]]. What are the [[LyricalDissonance lyrics]] about? It's about Ciel's AnguishedDeclarationOfLove.
** [[https://www.youtube.com/watch?v=ETVPH0qDKLY A fan's remastered edition adds to the heartbreak by adding Japanese audio from the drama CDs]]. Listening to Ciel beg Zero to come back is another punch to the feels, followed by a heart-stopping ''scream'' for [[SayMyName Zero's name]] that truly shows just how heartbroken and horrified Ciel is.
--> '''Ciel''': '''ZEROOOOOOOOOOOO!!!!!!!'''
* Add to all this Ciel's mysterious disappearance in ''ZX'' after Serpent went Maverick and the ''ZX'' series of games [[UncertainDoom failing to last long enough to elaborate what happened]]...and things get even ''worse''.

!!Supplementary Material
* Zero's own goodbye after the Elf Wars is over; he was going to seal himself before X comes in. The poignant talk - and, in the end, X's anguished scream - makes it all sadder. [[https://www.youtube.com/watch?v=ALsaI1vyW4Q Watch it here]].
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