* Adam, Garrus and Sarah having to investigate the apartment of [[spoiler:Shepard's killer]], which is just full of creepy decorations.
* Johann making "sculptures" of his AIA captors. AssholeVictim or no...
* Chapter 34: The utterly clinical way the narration from Jules's perspective talks about the rape and death of [[spoiler:Gianna Parasini.]]
* Chapter 38: The ChekhovsGun of staying too long under cloak giving you psychosis comes into vivid, horrible play.
* In the same chapter, "Zaeed Massani." [[spoiler: ''All of him.'']]
* Chapter 40: [[spoiler:Bren's corpse turning into a roegadyn Husk.]]
* Chapter 40: The aftermath of Ramsus' AttackReflector which results in his victims burning to death in painful agony, the fine detail describing the burns really doesn't help.
* Chapter 41: A Reaper burrowing out of a still-living man's skull by bursting out from the side of his head. Nearly everybody in Dosadi who has been "chipped" is essentially now a Reaper incubator.
* Chapter 42: [[spoiler:Draven]] getting remade into Scholar's personal killing machine. [[spoiler:Again, after seemingly having escaped that fate not too long ago.]]