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Yet another spinoff of the ''Franchise/YuGiOh'' series, specifically the [[Manga/YuGiOh original manga]], ''Manga/YuGiOhR'' is written by Akira Ito, one of Kazuki Takahashi's assistants on the original manga. The story, taking place [[{{Interquel}} between the Battle City and Memory World arcs]], kicks off with Yako Tenma, Pegasus' adopted son and protege, taking over Kaiba Corp and challenging Yugi to a duel. There, he reveals "The Wicked Avatar," one of three "Evil Gods" that Pegasus had designed before his death. After [[TheWorfEffect destroying Yugi's Osiris in one blow]], Yako kidnaps Anzu and takes her to the Kaiba Corp building, where he intends to "sacrifice" her in "Project RA" as revenge for Yugi causing , what he thinks, Pegasus's death at the end of Duelist Kingdom. [[note]]Those whose know the story will remember it was Dark Bakura who did that.[[/note]]

Yugi, Jonouchi, and Honda race to Kaiba Corp to rescue Anzu, only to find that Yako has commissioned the Card Professors--thirteen professional American duelists--to block their way. Our heroes must battle their way up the tower to stop Yako before he can carry out his plans. Meanwhile, Kaiba and Mokuba, not exactly thrilled with Kaiba Corp getting taken over ''again,'' [[StormingTheCastle storm the castle, er, skyscraper]], to reclaim the company.

Notable for its speedy pacing in comparison to the earlier series; duels usually only take up one or two chapters instead of dragging on and on.

All five volumes have been released in the U.S. under Viz's ShonenJump label.
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!!This series provides examples of:
* AerithAndBob: The Card Professors' names range from perfectly normal (Kirk Dixon, Pete Coppermine, Ted Banias) to downright strange (Deschutes Lew, Klamath Osler, Willa Mette). See ThemeNaming below.
* AllYourBaseAreBelongToUs: Let's face it, Kaiba Corp is pretty much the Mokuba of the [[{{Fiction500}} Fiction 500]].
* AvengingTheVillain: Unfortunately, Yako's trying to get revenge on the wrong person; other than defeating him at the end of Duelist Kingdom, Yugi didn't have a thing to do with Pegasus' death. The ''real'' culprit [[DemotedToExtra never even makes an appearance]].
* BadassGrandma: Mrs. Maico Kato, a tea-drinking, wheelchair-bound, doting grandmother... who also happens to be a highly-ranked professional Duelist.
* BatmanCanBreatheInSpace: Depres Scott's ThemeDeck plays with this; monsters in space are assigned a number of "life stars" based on their level and [[DeathsHourglass lose one at the end of each turn]]. Once they run out, they're automatically destroyed.
* BigCreepyCrawlies: The ThemeDeck of Mendo Cino, one of the Card Professors, consists of mantises. The Dreadscythe Harvester is larger than even the duelist who uses it.
* BiggerBad: Two of them:
** Though he never appears, Dark Bakura counts as he killed Pegasus in the Duelist Kingdom arc, which fuels Yako's motivation (though Yako blames the wrong person).
** [[spoiler:The Wicked Avatar has actually corrupted Yako, and causes him to lose it and try to bring back Pegasus.]]
* BigNo: [[spoiler: Yuugi lets one out when he believes that he's failed to save Anzu in time.]]
** [[spoiler: Yako too, after Kaiba's program stops the summoning of Pegasus.]]
* BlankWhiteEyes: A RunningGag in this series involves this happening to Jonouchi when he's overwhelmed with indignation. Don't worry; it's PlayedForLaughs.
* BrainwashedAndCrazy: [[spoiler:Yako is possessed by the Wicked Avatar. Gekko could also qualify during the period he is controlled by Yako.]]
* BrickJoke: After Yugi defeats Tilla in the first volume, Jonouchi asks if he can borrow her Duel Disk, since he hadn't brought his with him. At the very end of the series, he's seen repaying the favor by giving her the special black Duel Disk.
* CainAndAbel: [[spoiler:Inverted - Yako is the younger but evil brother, while Gekko is the older but good brother.]]
* CallingYourAttacks: Like he did with Marik in the main series, Jonouchi parodies this - when Jonouchi summons [[spoiler:Fiendish Engine Omega, after stealing it from Bandit Keith's hand]], he names it's attack "Jonouchi Crusher!". [[LampshadeHanging Lampshaded]] by the comic itself, as it adds the helpful note "Name coined by Jonouchi" underneath.
* CheatersNeverProsper: Bandit Keith tries to sneak a Ring Of Destruction card into his hand from outside his deck during his duel against Jonouchi. ''Of course'' it doesn't work.
** ChekhovsGun: The anti-cheating feature of the Duel Disks had never been triggered before in the story- it was only mentioned as part of the summary of the special rules of the series at the end of the previous volume.
* CherryTapping: The Wicked Avatar is always exactly ONE attack point stronger then the strongest monster on the field, but as Yakou points out, that one attack point makes all the difference.
* ChekhovsGun: Another one that ends up coming out of nowhere: the Divine Evolution card that can work on Gods that is used by Yakou when he possessed Gekko. Yugi gets it at some point, and returns the favour by using it on Obelisk, upgrading its divine rank to destroy the previously higher-ranked Avatar. Note that this ranking up ability wasn't referred to earlier.
* ChuckCunninghamSyndrome: Ryou Bakura (the normal one), is nowhere to be seen in this spin-off, despite accompanying Yugi and his other friends in nearly everything in the original manga story after the Monster World arc. One might assume that this is a case of R importing weird anime practices like Dark Yugi getting a growth spurt when he takes over Yugi's body, [[spoiler:[[FridgeBrilliance but he might probably be finishing up that]] [[TableTopRPG Egyptian "diorama" for the museum]]]].
** Ryuji Otogi, the SixthRanger of the original manga, also doesn't appear.
* CloningBlues: Played with, as while Yakou and Gekko are natural identical twins, flashbacks reveal that Yakou always felt like an inferior copy of his twin brother.
* ContinuityNod: At least in the Viz translation, Kaiba claims that the caliber of duelists at his company's latest sponsored tournament isn't quite to par and that perhaps he should think about [[Anime/YuGiOhGX opening up a school]].
* CurbStompBattle: Near the end of Volume Four, Yami crushes a Card Professor in a single panel with Osiris.
* DamselInDistress: Anzu. [[DesignatedVictim Mokuba]] actually gets left alone for once.
* DoubleEntendre: One of Mendo's cards forces each player to pay 1000 Life Points to normal summon any monsters. It's called [[ScreamingBirth "Labor Pain."]]
* DungeonBypass: Partial example; Kaiba handily defeats one of the Card Professors, who prepares to hand over the key card needed to get into the building... only for Mokuba to cheerfully announce that he's [[PlayfulHacker finished hacking through Yako's changes to the security system]]. Kaiba's sole reason for bothering with the duel in the first place was that he wanted a "warmup".
* {{Eagleland}}: Not only are the Card Professors Americans, but guess who's back...
* [[EvilCounterpart Evil Counterparts]]: The Wicked Gods for the God Cards.
* EvilLaugh: Depres indulges in this when he has Yugi against the ropes. Even Richie thinks [[LampshadeHanging he sounds over the top.]]
* {{Expy}}: Yako could qualify as Pegasus' Expy. Goes crazy after losing a loved one? Check. Wants to bring said loved one back regardless of what it takes? Check. Takes someone close to Yugi as hostage? Check. Even [[LampshadeHanging lampshaded]] by [[spoiler:Gekko]] when he mentions Yako is just like Pegasus.
* EyeScream: That eye-melting scene...
* GrandTheftMe: Project RA's goal is to remove Anzu's soul from her body [[spoiler: and put Pegasus' soul in her place.]]
* HeroicBSOD: Yami has one after seeing what's become of Anzu's soul on top of how tired he was, and Kaiba has one after being defeated by Yako ([[spoiler:or so Yako thought]]).
* HoistByHisOwnPetard: A very mild and non-violent example of this happened to Kirk Dixon, who, after losing his duel to Yugi, became so distraught by his loss he stumbled upon a booby trap he had set up himself and was promptly sent downstairs into the basement.
* HopeSpot: During Gekko's duel with Richie, [[spoiler: just as Gekko is about to win with a devastating direct attack, there is a sudden flash of light and Richie has won. A quick flashback next chapter reveals what happened, and leads into a nasty TearJerker.]]
** A minor one in the duel against Yako where the Wicked Dreadroot had center stage (pun not intended, they were dueling in a theater) and Yugi tries to bring out Ra. Yako negates the summoning, and then next turns, proceeds to make Dreadroot even stronger.
* [[IHaveYourWife I Have Your Non-Girlfriend:]] Yako kidnapping Anzu drives the entire plot
* ItsAllUpstairsFromHere: ''Of course'' Yako's going to wait for Yugi on the top floor of the Kaiba Corp building. Jonouchi and Honda have it even worse, since they fell through a TrapDoor early on and ended up in the basement. Subverted with Kaiba and Mokuba, who [[DungeonBypass came in through the roof]].
* JerkAss: Not like this is any sort of surprise, but Bandit Keith pretty much started this whole mess by telling Yako that Yugi killed Pegasus. Of course, this is all untrue, but Keith couldn't care less either way, [[spoiler: as long as he gets the chance to duel Jonouchi again.]]
* KickTheSonOfABitch: Bandit Keith gets to literally be both on the giving and the receiving end of this one. The former is when he suddenly starts beating Ted Banias up and increases the amount of debt he owes him, all for losing a duel against [[spoiler: Gekko]] (it should be noted that Banias was a nasty piece of work himself, just not as much as Keith). The latter comes almost immediately afterwards, when Richie starts to kick Keith around for not following orders once they meet up. [[spoiler: Keith then returns the favour by knocking Richie down and then defeating him with the Wicked Eraser.]]
* LawOfChromaticSuperiority: The black Duel Disk used by the highest-ranked member of the Card Professors guild. Gekko even compares it to a black belt in martial arts.
* MadEye: So what was your first clue that Yako wasn't [[IncrediblyLamePun playing with a full deck?]]
* MeaningfulName: Humorous, unintentional example: one of the Card Professors is named Tilla ''{{Mook}}.''
* MissionControl: Mokuba takes on this role, [[PlayfulHacker deactivating Yako's security measures,]] monitoring the Duel Server's status, and [[VoiceWithAnInternetConnection keeping the others filled in on the current situation.]]
* MoodWhiplash: Chapter 27 opens with Jonouchi and Honda beating up tons of Mooks, with a humorous LampshadeHanging by Jonouchi about how long its been since he fought someone with his fists instead of cards. [[spoiler: Then we shift back to Yuugi and Gekko, who has just lost and thus prevented Yuugi from being able to advance and rescue Anzu. Ouch.]]
* NearVillainVictory: [[spoiler: Yakou has just defeated Seto Kaiba, Bandit Keith successfully summoned The Wicked Eraser, and now Anzu's soul is being consumed to revive Pegasus...wait, why is it stopping? Well, thanks to Keith's Revenge duel against Richie just a moment ago, the Kaiba brothers were able to force the program to stop!]]
** [[spoiler: Not actually due to the revenge duel. Yakou actually ''needed'' that to happen to ressurect Pegasus, due to the energy the Wicked Gods produced (one of which Keith had). It's actually implied that it was the duel between Yugi and Cedar Mill (the mook he flattens with Osiris) that Kaiba used, as Yako realizes after the said Near Victory that Yugi must have managed to begin to make his way up again.]]
* {{Necromantic}}: Yako.
* NightmareFetishist: Tilla, who refers to her Vampire's Curse card as her "master" and [[KissOfTheVampire allows it to suck her blood to grow stronger]]. (That's right - the ''holographic vampire actually bites her.'' You can see the bite marks in her neck if you look closely.) Honda and Jonouchi both think it's quite nasty.
* NoFairCheating: The duel disks sound an alarm if you try to make an illegal move.
* NotSoDifferent: Lampshaded by Richie after [[spoiler: Yuugi defeats Depre]], noting that Yuugi's desire to save Anzu is very much the same as their desire to revive Pegasus.
** He zig-zags this all over the place with Gekko, though, commenting that their dueling styles are similar, yet Richie was winning for most of the duel [[spoiler: and won]], and they were fighting for similar reasons, Gekko was fighting to ''protect'' Yako, who he still had, while Richie didn't have Pegasus, making him more desperate to save him.
* NotSoStoic: Depres Scott. Normally he shows little emotion, but during his duel with Yugi he lets loose with an EvilLaugh when he has Yugi near defeat, and then [[spoiler: breaks down in tears (after losing to Yugi)]] so much Richie has to get someone to take care of him.
* OhCrap: The general reaction when a God shows up, but special mention has to go to when Kaiba [[spoiler: summons out Blue-Eyes Ultimate Dragon and Yako nicks the fusion materials for sacrifices to summon the Wicked Avatar. Then it transforms into the Ultimate Dragon, and its effect is finally revealed, and it is just as powerful as all of Ra's put together.]]
* PeopleJars: Subverted. Not only are all the Duel Monster "specimens" simply holograms, but the one human among them put himself in there so he could prank anyone who came by.
* PhantomZonePicture: Anzu's soul gets placed in a playing card the same way Pegasus used to imprison his victims. Yugi can actually communicate with her by placing the card in his Duel Disk.
* PunchClockVillain: Most of the Card Professors don't have anything personal against Yugi or his friends--they're just in it for the pay, and they don't even try to cheat. Then again, they don't seem to have any problem with the idea of an innocent girl getting sacrificed, either... Richie later clarifies that he simply considers Pegasus to be more important, and makes it clear he doesn't care about the others.
* RevengeByProxy: Yako targets Yugi by turning Anzu into a HumanSacrifice [[spoiler: so he can resurrect Pegasus.]]
* SchrodingersCat: Bandit Keith looks remarkably healthy for somebody who was MindRaped to death during the Duelist Kingdom finals...though he does look like he lost a bit of weight.
** Mind you, it is revealed that [[spoiler: Bandit Keith is alive because he was the test subject for the R.A. Project, which is the source of Yako's confidence that his ambitions will be successful.]] And he's later shown to be pretty screwed in the head, [[spoiler: possibly due to how he was resurrected through his deck, which was incomplete because Jonouchi nicked his Time Machine card.]]
* SempaiKohai: Yako is Pegasus' kohai.
* ShapeshifterGuiltTrip: During the final showdown against Yako, [[spoiler: The Wicked Avatar takes Yugi's form. Yako says it's a manifestation of Yugi's hatred for his other self for being the true Game King and preventing Yugi from earning that glory himself. Yami almost falls for it, until Yugi briefly takes over and insists that he would never have been able to [[DefeatMeansFriendship make so many new friends]] or broaden his horizons if it hadn't been for his other self.]]
* ShrinkingViolet: [[{{Meganekko}} Reiko]], whose first instinct upon encountering another Duelist is to run away, and is described as having no fighting spirit when she does duel. [[spoiler: Ironically, she would have beaten Jonouchi if she had stuck to her passive deck destruction strategy instead of gaining the confidence to straight-out attack him.]]
** Her whole approach to dueling was passive-aggressive, really, and was effective since her deck was so broken. Jonouchi even [[LampshadeHanging lampshades]] this, and Honda calls him otu on only winning because he convinced her to attack. See UnderestimatingBadassery for more.
* SixthRanger: [[spoiler: Gekko.]]
* SpannerInTheWorks: [[spoiler:Keith, when you consider that Yakko would've succeeded if Keith hadn't decided to get revenge on Richie]]
** At the same time, [[spoiler:Keith's duel with Richie was actually necessary for Yako to summon Pegasus' soul, since he needed the energy generated from summoning the Wicked Eraser.]] The REAL spanner was [[spoiler:Seto and Mokuba Kaiba - Yako hadn't realised that Mokuba was in a place where he could do any significant damage, nor did he think that Mokuba could have used Keith's duel to shut down his program.]]
*** [[spoiler: Though later, Yako implies that it was Yugi who was dueling to have the program sent in, as he realizes after Kaiba tells him what he did that Yugi must still be dueling (or rather, he starts to perk up and realize that Yugi is moving up again, allowing him to have another shot at the Project]]
* SymbolSwearing: Bandit Keith, lovable evil foreigner that he is, gets his speech liberally peppered with this in the Viz translation.
* TheOnlyOneAllowedToDefeatYou: Kaiba says this to Yugi almost word for word when they meet up.
* ThemeDeck: Naturally.
* ThemeNaming: The Card Professors are all named after Intel project code names, which are in turn named after the places where Intel labs are located, according to TheOtherWiki.
* ThereIsNoKillLikeOverkill: Played with in Seto's duel with Yakou, [[spoiler: as while Seto's gratuitous summoning of the Blue-Eyes Ultimate Dragon is ultimately his downfall, Yakou's similarly gratuitous summoning of two Evil Gods works just fine for him. Justified though, given that they're God cards, and Kaiba was really playing for time at that point.]]
* TheThreeFacesOfEve: The three female Card Professors. Reiko Kitamori, who is shy and new to dueling, is the child. Tilla Mook, who [[WomanInBlack dresses in black]] and builds her deck around the KissOfTheVampire, is the seductress. And Mrs. Maico Kato, who is calm, mature, and amiable even as she's whupping you at card games, is the wife.
* TookALevelInJerkass: Honda, who spends a good portion of Jonouchi's duels chastising him for loosing rather than try and support him and [[spoiler: Assumes Jonouchi goading Reiko into attacking was just so he could win rather than to help her grow as a duelist]].
* TwinSwitch: Sort of - [[spoiler: Yako pulls a GrandTheftMe on his twin brother, Gekko, in order to test his new deck against Yugi.]]
* UnderestimatingBadassery: When Jonouchi first encounters Reiko Kitamori, he thinks she doesn't look too tough. And indeed, while Reiko is [[ShrinkingViolet easily intimidated]], [[spoiler: She is in fact one of the most powerful duelists in the series, using a deck-destruction strategy that would put Seto Kaiba and Isis Ishtar to shame. Oh, and she only started playing Duel Monsters a month ago.]]
* TheUnFavourite: [[spoiler:Yako believed he was the worse duelist out of the two. Pegasus described Gekko as a perfect duelist, while Yako was "an unfinished rough diamond." Subverted by the end of the series, where it is revealed that Pegasus saw the potential in Yako to be a great duelist, hence the "rough diamond" metaphor, while Gekko had "perfected" himself and was incapable of growing any stronger.]]
* VillainousBreakdown: [[spoiler: Bandit Keith]] in the final volume, during his duel with [[spoiler: Jonouchi. Yako as well, after Kaiba foils his plan the first time.]]
* WeakButSkilled: [[spoiler: Gekko Tenma, who uses hordes of low attack monsters with potent effects, supplemented with spells and traps.]] Richie uses a similar strategy, and Lampshades the similarities.
** Yugi's Toy-themed deck is like this as well.
* WithGreatPowerComesGreatInsanity: Yako used to be a quiet, withdrawn young man. That all changed once he started creating the Evil Gods, which warped his grief over Pegasus' death into homicidal rage toward Yugi.
* WhiteGloves: Yako wears them.
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