* When Ram finds out that Flynn is a user [[spoiler: just before he derezzes]], finally knowing that the users have not abandoned their followers and that there is hope for the system after all.
* When Tron discovers Yori, a shell of her former self and unable to recognize him. He grabs her, transfers some power into her, and she snaps out of it, hugging him with relief.
* The cut scene where Yori brings Tron back to her home. She shows him that she still has a playful and rebellious streak (like her User counterpart, who essentially splits the difference between the overly-serious Alan and the less-than-serious Flynn), turning the barren apartment into a beautiful paradise for him and then taking the time to... interface.
* The I/O Tower. You hear of Programs speaking of the Users like we speak of Gods, but when Tron finally steps into the I/O beam and connects with Alan, the sheer ''joy'' on Tron's face truly delivers how important and powerful the need for Programs to contact their users is.