* Watching Reptil in "This Al Dente Earth!" give up his Dinosaur powers [[spoiler:which were caused by a fossilized fractal]], long story. The kid was a real trooper about the whole deal. [[spoiler:It's even more heartwarming when he discovers that without the fractal he can now change his whole body into that of dinosaurs.]]
* While it was do to a few miscommunications, [[PapaWolf Magneto]] (who, keep in mind, has never really been a top choice for a "father of the year" award) and [[BigBrotherInstinct Quicksilver]] trying to "rescue" Wanda from being "held prisoner" by the Super Hero Squad was kind of nice.
* Magneto and Scarlet Witch hugging at the end of the BadFuture episode.
* This exchange from "Mother of Doom".
-->'''Thor''': I'll make you proud, father.
-->'''Odin''': You already have.
* Despite the show mainly being humorous, this one scene near the end of the last episode is nice.
--> '''Iron Man''': [[spoiler: Surfer]] please, we all know it was the sword corrupting you.
--> [[spoiler:'''Silver-Surfer''']]: Totally, still I must pay for my crimes.
--> '''Iron Man''': Totally, but when you've done your time. You'll have a place on the Super Hero Squad to come back to.
** The best part comes at the end when the heroes do the roll-call, [[spoiler: and Silver Surfer ''is'' right there with all the others.]] D'awww.