* "Shags to Riches"
** Shaggy learns about his inheritance.
---> '''Shaggy''' ''(on phone)''''':''' Hello? ...Yeah. ...''(eyes widen)'' My uncle ''what''? He left me ''how'' much? ...Like, a bi--a bi--A BIIIIIIIII--ohhhhhhhhhhh... ''(faints)''\\
'''Scooby:''' Ruh-roh...
** Phibes demanding to know whether Agents 3-13 managed to find Albert. Agent 3 says he ''wants'' to tell him this, "but that would be fibbing, and you told us never to fib." Phibes pretends to thank the agent for this, then shoots a laser very close to him.
** Agents 1 and 2 approach the front door of Uncle Albert's mansion. Agent 1 says "At the count of three, break it down." At the count of three, Agent 2 starts to bust a move like MC Hammer.
** At the end of the episode, Dr. Trebla reveals to Professor Phibes that the formula they found was actually for hot dog tacos. Phibes bluntly complains that he hates hot dog tacos while his ship gets swallowed by a giant whale.
* "More Fondue for Scooby Doo"
** The reason Phibes wants to destroy the global warming conference is because its host once "had the nerve to call me mad!" Partially thanks to the angry face he makes as he says this, that line is EvilIsPetty at its most hilarious.
** When Phibes actually tries to fire his super laser, he's consternated to find out that nothing happened and something drained the energy from the laser. He is not happy to find out that it got drained by being used to melt giant graffiti messages on the mountain slopes.
--> '''Phibes:''' Agent 5 rules. Agent 6 loves Betty. Doug is #1. Will Agents 5, 6 and ... Doug, please raise their hands?
--> ''Agents 5, 6, and 10 raise their hands, cue them being dropped out of the zeppelin (although they survive).''
* "High Society Scooby"
** Phibes boasts about how he manages to keep a majestic, ferocious lion from attacking him. When Trebela points out that this is only because he chained it to a wall and gave it a plate full of steaks [[DistinctionWithoutADifference Phibes insists on emphasizing that more precisely, he "Controls" it]].
** Phibes is having his agents test a giant gerbil cage-like environment he's [prepared for the scientists he wants to kidnap. Agent 3 takes it a little too far, requesting more seeds for his bowl.
** Shaggy and Scooby buying their way into the country club.
** A lot of Agent 2's attempts at being a ninja qualify. Highlights include how his {{Kiai}} sounds like a chicken clucking and using stealth to annoy Agent 1.
** Dr. Eisenhorn mopes when told he has to choose between getting ice cream and a research grant.
** When Dr. Eisenhorn remarks that he doesn't see how Shaggy can be Albert Shaggleford's nephew, Shaggy doesn't get what Eisenhorn is saying and answers that he's his Uncle Albert's nephew because Uncle Albert is his mother's brother.
** The BrickJoke at the end of the episode where Phibes has his lion chase Agents 1 and 2 through the giant gerbil habitat as punishment for their failure.
* "Party Arty"
** Agent 2 getting invited to Shaggy and Scooby's housewarming party in his latest disguise and being more preoccupied with that than his actual job. This gives Dr. Phibes multiple opportunities to use 2's new shock collar, which is also a lot funnier than it should be.
** Robi's {{Cloudcuckoolander}} nature and always mishearing things is played for maximum laughs throughout the episode.
*** After being told to lay low, play cool, and stay completely out of sight to avoid a neighborhood association inspection, he declares that he will take to his new tasks with great enthusiasm, [[LiteralMinded laying flat on his back as low as he can, then covering himself with ice from his built-in ice machine until he is out of sight]].
*** When facing the murderous robot Art, he declares: "Bad robot! Now retreat, or I will bring to bear my vast array of weaponry, including my dreaded cleansing jet of warm, sudsy water, my feather duster, and last but not least, my dental floss dispenser!" This works about as well as you'd expect once the robot attacks him.
*** He makes them shoestring spaghetti from real shoestrings, and when he sees they aren't interested, offers to take them over to the neighbor (who already hates him).
*** His report on the chores.
--> '''Robi:''' Nephew Shaggy, Rooby-Roo; I have completed my list of chores, including mowing the carpet, scrubbing and buffing the lawn, and ironing the television set, which, quite honestly, could have gone better.
* "Smart House"
** Shaggy and Scooby put out an add for a new chef and to their horror Robi applies for the position, he insists on being treated like any other applicant and announces that he will race to the door to introduce himself, before smashing through the wall.
** When Shaggy and Scooby want to hire a different chef instead of Robi, who is becoming protective of his new position, they tactfully put it to him that they need to give all of the applicants a chance.
--> '''Robi:''' (brightly) I understand!
--> ''(suddenly his expression and voice get darker and flatter)''.
--> '''Robi:''' I disagree.
--> ''(His voice and smile go back to normal)''
--> '''Robi:''' But I understand.
** Phibes has attempted to hack into the Pentagon, and, unaware that Shaggy and Scooby intercepted the virus (which is causing havoc throughout the mansion), confidently calls the military leader to make his demands. The unphased General smugly insults Phibes in response (the phrase "Wussy metal hand" is included) before revealing that he's fired a missile at Phibes submarine by tracking the transmission. Phibes confidently insists that he must be lying right before the ship gets badly rocked by a near-hit from a missile.
** Phibes hackers (a pair of High schoolers modeled after Film/NapoleonDynamite and his brother) obsess over roleplaying games throughout the episode and get mad at Phibes for not giving them lunch money.
* "Lightning Strikes Twice"
** On Dr. Phibes' list of people he hates, he has "People with hair" and "Santa Claus" listed above Shaggy and Scooby.
** Dr. Phibes' agents [[MistakenForAliens thinking Shaggy and Scooby are aliens]] after the pair get covered in lemon-lime pudding.
* Dr. Phibes's speech about how he lost his hand and hair and became a living lightning rod due to an electrical experiment as his men weakly try to assure that those injures aren't noticeable.
** When Phibes agents see Shaggy and Scooby and think they are aliens, they hurriedly leave, while Agent 2 wishes Dr. Phibes good luck "punishing the rest of the world for your own misfortune" with a completely straight face.
** When Shaggy and Scooby, in their alien disguise, try to pass off Robi as their android, he mishears them and loudly says he is their Aunt Droid.
* "Don't Feed the Animals"
** One of the jungle marmosets does an insulting impression of Dr. Phibes.
** When Dr. Phibes is testing out the local age-reducing flora on Agent 13 and is excited by the progress, 13 irritably replies that it's also made him gassy and he's growing a tail.
** A CrossesTheLineTwice example when Phibes is informed that he would wipe out the jungle marmosets if he harvested enough of the plants necessary to make him immortal, and he cheerfully replies that means there's no downside.
* "Mystery of the Missing Mystery Solvers"
** Dr. Phibes tries to use his Swiss army prosthetic on Shaggy and Scooby but is sidetracked by one of the settings being labeled "Dr. Phibes is a stupid head." Angered, he asks who wrote that on his arm. Two of his henchmen point at each other, causing Phibes to sigh and remark that he'll deal with them later.
* "Chefs of Steel"
** When testing the effects of hypnosis by using it on Agents 2, 5, and 8, Dr. Phibes refers to it as a combination lunch/experiment. When Agent 2 comes up with the portmanteaus "Lunchperiment" and "Experimunch", Dr. Phibes quips that Agent 2 shouldn't hurt himself by thinking too hard.
** After the experiment, Agent 2 thinks he's a guard dog, Agent 5 thinks he's a chicken, and Agent 8 thinks he's a cat. Dr. Phibes gets very frustrated with their antics.
-->'''Dr. Phibes''': No, daddy's latte is not for doggy!
** The ending, where the chef, who is now the victim of HypnotismReversal, is forced by Shaggy to blow a raspberry at Dr. Phibes.
* "Pole to Pole"
** Dr. Phibes reveals that the elderly Agent 13 is his own father.
** When informed about what will happen when the EMP generator goes off, Shaggy and Scooby [[SkewedPriorities are more concerned about being unable to play video games rather than technology in general being rendered useless and the adverse effect this would have on civilization]].
* "The Many Faces of Evil"
** The bizarre varieties that Dr. Phibes' clones come in, like a Clown Dr. Phibes who throws pies and a Pirate Dr. Phibes who goes about wearing pirate regalia.
** Evil Phibes annoys the original Dr. Phibes by constantly finishing his sentences.
* "Cruisin' for a Bruisin'"
** Because Dr. Phibes' usual psychiatrist isn't available, he ends up having to have his head examined by his dumb henchman Agent 2. The highlights of the session include Agent 2 asking how many D's are in "idiot" when Dr. Phibes complains about these circumstances and Dr. Phibes saying that every ink blot shown to him looks like either a "dog" (Scooby) or a "hippy boy" (Shaggy).
** Agent 2 gets carried away with the word association exercise to the point that the rest of the episode has him yell random words every time Dr. Phibes talks to him.
** At the end of the episode, Dr. Phibes takes out his frustrations on Agent 2's sock puppet Andy and tries to "drown" him.
* "There is a Doctor in the House"
** Robi's faulty security system that zaps everyone who approaches the front door ''except'' Dr. Phibes.
** Dr. Phibes complains about how he doesn't have his monogrammed pajamas that say "PP". Scooby predictably laughs at how this sounds.
-->'''Dr. Phibes''': Oh, grow up! It stands for Phineas Phibes!
* Dr. Phibes berating himself for not realizing that Dr. Trebla was a SdrawkcabAlias used by Albert Shaggleford the whole time in "Uncle Albert Alert".
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