* "Like with pie."
* Dr Horrible managing to give a credible look of bemusement at Captain Hammer's "gently wafting curtains" line - whilst being strangled.
* Dr Horrible bemoaning the fact that Operation Heist didn't go as planned at the end of "A Man's Gotta Do": BALLS! SmashToBlack.
* "Did you notice that he threw you in the garbage?"
** "What heist were you watching?"
* ''"The Evil League of Evil is watching so beware/The grade that you receive will be the last we swear!/So make the Bad Horse gleeful, [[{{Squick}} or he'll make you his mare]]/You're saddled up/There's no recourse/ Hi-ho Silver!/Signed, Bad Horse."''
* How can you mention Dr. Horrible here without this?
-->'''Captain Hammer''': She's giving it up. She's giving it up hard. Because she's with Captain Hammer. And these... (''holds up his fists'') ...are not the hammer.
-->''(He leaves the frame for a moment while Billy stares after him.)''
-->'''Captain Hammer''': (''returns to the frame'') [[DontExplainTheJoke The hammer is my penis.]]
** Watch Neil's facial expression during that scene: he's biting his lip, clearly trying to keep from laughing.
* Billy gets one just before this, when he learns Captain Hammer is going to stop by the laundromat:
-->'''Billy''': (''tries to look at his watch, but isn't wearing one'') Oh goodness, look at my wrist, I gotta go.
-->'''Penny''': But what about your clothes?
-->'''Billy''': (''turns back, glances in washer'') I don't love these. See ya!
* Half the exchanges between Penny and Billy at the Laundromat:
-->'''Billy''': I want to be an achiever. Like Bad Horse.
-->'''Penny''': The Thoroughbred of Sin?
--> '''Billy''': ...I meant Gandhi.
* Later:
-->'''Penny''': Billy?
-->'''Billy''': Yeah?
-->'''Penny''': You're driving a spork into your leg.
-->'''Billy''': So I am. Hilarious.
* For me, it has to be the part where Dr. Horrible pauses in the middle of his SugarWiki/MomentOfAwesome VillainSong to correct a cowering reporter on the spelling of his name. Then singing about how there will be anarchy... [[ComicallyMissingThePoint that he will rule]].
** And a couple minutes later, Captain Hammer's Moment of Ham: " - '''[[UnPaused WAAAAAAAAAAAAAAAAAAAAY]]'''!"
* Also deserving special mention: [[spoiler:"Nation Mourns What's-Her-Name," a moment that [[MoodWhiplash manages to be funny in the middle of]] a ''colossal'' DownerEnding.]]
** [[spoiler:And it has a built-in TearJerker too, so it doesn't even break the mood. Laughing through tears. Joss is evil.]]
** In the same sequence in the ending, [[spoiler:Captain Hammer in tears while talking to a therapist]].
* "[[LooseLips I also need to be a little more careful about what I say on this blog]]. Apparently the LAPD ''and'' Captain Hammer are among our viewers."
** "...He threw a car at my head." In case there was any doubt that Billy is TheWoobie, they made it funny.
* "Do you need anything dampened or...made soggy?"
* The entirety of the song 'Everyone's a Hero' by Hammer. Yes, the entire damn thing. It goes SerialEscalation TomLehrer-style - just when you think Captain Hammer can't be more of an [[{{Jerkass}} asshole]], he is!
--> "So I thank my girlfriend, Penny/Yeah, we totally had sex..."
** Also:
--->[[CueCardPause "I hate the homeless...ness problem that plagues our city.]] Everyone deserves the basic....You know what? I don't ''need'' tiny cue-cards."
** And watch Penny's face while he's singing, she seems to be thinking WhatAnIdiot, then [[JerkAss What a Jerk Ass]].
* Let's not forget Hammer's first exchange with Horrible:
--> '''Hammer:''' It's curtains for you, Dr. Horrible! [[{{Metaphorgotten}} Lacy, gently-wafting curtains.]]
* The look on Hammer's face during this exchange in "So They Say":
-->'''Captain Hammer''': This is so nice/I just might sleep with the same girl twice/They say it's better the second time/They say you get to do the weird stuff...
-->'''Hammer's Fanclub''': We'd do the weird stuff!
** I found this part particularly funny because it implies that every girl he's ever slept with has dumped/been dumped by him before they could do it again.
* Also, pretty much all of the [[WebVideo/CommentaryTheMusical 'commentary']]... may I add, the fact they wrote a ''musical'' (pseudo) commentary possibly counts as a Funny Moment... but especially the 'sea shanty' exchange.
-->'''NPH''': Songs can hurt like a fist.
* [[http://www.youtube.com/watch?v=gFAhVyyL3SU The Tur-Mohel's application]] to the Evil League of Evil. The application requirements include a minion... so Tur-Mohel has a ''Minyan'' (a group of ten adult Jewish males). And that's just [[IncrediblyLamePun the tip]] of the iceberg.
* {{The reve|al}}lation of [[spoiler:Bad Horse]]. Admit it, how many of you expected [[spoiler: ''he'd actually be a horse'']]?
* "Oh, I'm in pain! I think this is what pain feels like! Oh, mama! Someone maternal!"
* At one point during the soup kitchen scene of "My Eyes", [[spoiler: Dr. Horrible, [[PaperThinDisguise wearing a fake moustache]]]] takes the place of a soup sever. [[FunnyBackgroundEvent Once you see it]]...
** Not to mention that he's a spectacularly bad soup server, mainly because he's too busy given Penny and Hammer a DeathGlare to pay attention.
* ''Dude'', isn't anybody going to point out how bizarre it is to see [[{{Series/Firefly}} Nathan Fillion]]...singing?
* [[http://www.youtube.com/watch?v=UC3v_Q1RAyE Felicia Day gets pranked]] by a group of people cosplaying as the singing Bad Horse chorus.
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